Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4639
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   241   2e-64
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   237   5e-63
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   144   6e-35
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    48   8e-06
04_01_0440 + 5746474-5746662,5746895-5747251                           28   5.0  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    28   6.7  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   8.8  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  241 bits (591), Expect = 2e-64
 Identities = 110/148 (74%), Positives = 126/148 (85%)
 Frame = +1

Query: 70  CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 249
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 250 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDI 429
           G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE ND VL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284

Query: 430 PGVRFKVVKVANVSLLALYKEKKERPRS 513
           PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  233 bits (571), Expect = 6e-62
 Identities = 107/141 (75%), Positives = 121/141 (85%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 264
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 265 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDIPGVRF 444
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE ND VL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 445 KVVKVANVSLLALYKEKKERP 507
           KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  237 bits (580), Expect = 5e-63
 Identities = 109/143 (76%), Positives = 123/143 (86%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 264
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 265 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDIPGVRF 444
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE ND VL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 445 KVVKVANVSLLALYKEKKERPRS 513
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  144 bits (348), Expect = 6e-35
 Identities = 66/102 (64%), Positives = 77/102 (75%)
 Frame = +1

Query: 91  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 270
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 271 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAG 396
           NSAI KC RVQL+KNGKK+ AFVP DGCLN I+ N+   V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +1

Query: 376 D*VLVAGFGRKGHAVGDIPGVRFKVVK 456
           D VL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 144 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 242
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 425 SPTA*PLRPNPATST*SFYSMWFRQPSRGTNAVTFFP 315
           +PT  P  PNP  ST    SM F+ PS    A   FP
Sbjct: 3   TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 544 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 395
           T GH+++  P+ L     LCR   E     + ++  P  E  E H+  DL   I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,273
Number of Sequences: 37544
Number of extensions: 441011
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)