Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4639
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   256   1e-68
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    32   0.37 
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  256 bits (626), Expect = 1e-68
 Identities = 116/143 (81%), Positives = 130/143 (90%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 264
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 265 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDIPGVRF 444
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +E ND VLV+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 445 KVVKVANVSLLALYKEKKERPRS 513
           K+VKVAN SL+AL+K KKERPRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 29/66 (43%), Positives = 41/66 (62%)
 Frame = +1

Query: 211 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLV 390
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++ +  VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 391 AGFGRK 408
            G GR+
Sbjct: 129 KG-GRR 133


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = -2

Query: 429 NVTDGVTFTTESRH*YLVVLFDVV*ATVTGDECGHFLSVLNELYTDAFADGRVGLLSFYT 250
           N+T  V F       Y  + F +    +TG   G +   LN  Y+ A+ D    L+ FYT
Sbjct: 150 NITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI--LMEFYT 207

Query: 249 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 136
            F    +  +R   E  +    T+   ++ F R  LF+
Sbjct: 208 KFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFS 241


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 156 VRPSLFTTVVHVLTRRSYSSG 94
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical
           protein F53C3.2 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
 Frame = -2

Query: 552 ASRQQVTYHNVHL*SWSL-----LFLFVESEERHVGYFYHLKTNSGNVTDGVTFTTES-R 391
           AS+  VT   V + S+ +     + LFV+SE      F  + + +GN++D VT   E+ +
Sbjct: 36  ASKSHVTNLKVKINSFEINVTENVHLFVKSEHGPTFNFRTVTSANGNISDDVTPANENEK 95

Query: 390 H*YLVVLFDVV*ATVTGDECGHFLSVLNELYTD 292
           H +    F++       +   HFLSVLN    D
Sbjct: 96  HRWYKKGFEL------RNWIEHFLSVLNHSKID 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,761
Number of Sequences: 27780
Number of extensions: 347062
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)