Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4636
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical pr...    38   0.009
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.46 
Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF039046-12|AAB94215.1|  299|Caenorhabditis elegans Hydroxy-acyl...    30   1.8  
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical
           protein B0272.3 protein.
          Length = 309

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 71  RKFSISTSQNAIKTVTVIGGGLMGSGIAQVS 163
           R  S +   + I  VT+IG GLMGSGIAQVS
Sbjct: 11  RGLSTTAQLSKINNVTIIGAGLMGSGIAQVS 41


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 77  FSISTSQNAIKTVTVIGGGLMGSGIAQVS 163
           F+   +   I+ V ++G G MGSGIAQV+
Sbjct: 2   FTAKCAMQNIRNVAIVGSGQMGSGIAQVT 30


>Z81055-2|CAB02891.2|  437|Caenorhabditis elegans Hypothetical
           protein F01G10.2 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 83  ISTSQNAIKTVTVIGGGLMGSGIA 154
           I++    IK+V VIGGG MG GIA
Sbjct: 32  INSKSIPIKSVAVIGGGTMGRGIA 55


>AF039046-12|AAB94215.1|  299|Caenorhabditis elegans
           Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 86  STSQNAIKTVTVIGGGLMGSGIAQV 160
           S ++N    V + G G+MGSGIAQV
Sbjct: 4   SGNENPKPLVAIFGAGMMGSGIAQV 28


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 104 IKTVTVIGGGLMGSGIAQVS 163
           +  + V+G GLMG+GIA V+
Sbjct: 378 VNEIAVVGAGLMGAGIANVT 397


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 104 IKTVTVIGGGLMGSGIAQVS 163
           +  + V+G GLMG+GIA V+
Sbjct: 352 VNEIAVVGAGLMGAGIANVT 371


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 104 IKTVTVIGGGLMGSGIAQVS 163
           +  + V+G GLMG+GIA V+
Sbjct: 378 VNEIAVVGAGLMGAGIANVT 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,731
Number of Sequences: 27780
Number of extensions: 247286
Number of successful extensions: 506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)