Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4634
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 167 6e-43
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 157 1e-39
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 109 2e-25
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 79 3e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 77 2e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 73 2e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 70 2e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 4e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 69 5e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 68 7e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 67 2e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 1e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 3e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 6e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 60 1e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 1e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 8e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 57 2e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 5e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 2e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 3e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 4e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 8e-06
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.23
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.2
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 2.9
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 26 2.9
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 3.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 5.0
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 25 6.6
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 167 bits (407), Expect = 6e-43
Identities = 77/96 (80%), Positives = 91/96 (94%)
Frame = +3
Query: 219 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 398
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 399 KCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
+CHACIGGT VR+D+ L++GVHVVVGTPGRV+DMI
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMI 152
Score = 76.2 bits (179), Expect = 3e-15
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +2
Query: 92 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 211
D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 157 bits (380), Expect = 1e-39
Identities = 75/98 (76%), Positives = 84/98 (85%)
Frame = +3
Query: 213 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 392
KGRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 393 NAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
N +CHACIGGT+V DI +L+ G HVV GTPGRV DMI
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMI 154
Score = 59.3 bits (137), Expect = 3e-10
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2
Query: 101 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 217
V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 109 bits (263), Expect = 2e-25
Identities = 52/100 (52%), Positives = 69/100 (69%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 383
+A GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 384 DHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDM 503
H+N K GGT +R+DI +L VH+VVGTPGRV D+
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 110 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 217
F+D LK ELL GI+ GFE+PS IQ+ +I + G
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 79.4 bits (187), Expect = 3e-16
Identities = 39/102 (38%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 383
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 384 DHLNAKCHACIGGTNVREDIPQ-LESGVHVVVGTPGRVYDMI 506
+ K +++ +P+ + +V+GTPG V D++
Sbjct: 209 KYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLM 245
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 101 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 199
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 77.0 bits (181), Expect = 2e-15
Identities = 42/98 (42%), Positives = 59/98 (60%)
Frame = +3
Query: 213 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 392
+GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +L
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 393 NAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
N K +GG ++ L HVVV TPGR+ D+I
Sbjct: 103 NLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLI 140
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.3 bits (172), Expect = 2e-14
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = +3
Query: 219 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 398
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 399 KCHACIGGTNVREDIPQLESGVHVVVGTPGRVYD 500
+ +GG ++ L HV+V TPGR+ D
Sbjct: 144 RSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Score = 28.3 bits (60), Expect = 0.71
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 92 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 199
++ +TF ++ + +EL GF+ P+ IQQ AI
Sbjct: 42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 69.7 bits (163), Expect = 2e-13
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Frame = +3
Query: 216 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 392
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 393 NAKCHACIGGTNVREDIPQLE---SGVHVVVGTPGRVYDMI 506
+ + GG N+++D+ + H+VV TPGR+ ++
Sbjct: 148 DVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALV 188
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +2
Query: 110 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 220
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.9 bits (161), Expect = 4e-13
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIA 377
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKD 161
Query: 378 LGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGR 491
+ + A +GG ++ E L +VV TPGR
Sbjct: 162 FSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGR 199
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 83 RTGDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 217
+ G+ F M L + LLR I+ GF+ P+ IQ++ I ++G
Sbjct: 62 KKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 68.5 bits (160), Expect = 5e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +3
Query: 207 ASKGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 380
AS G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 381 GDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
N + + GG V++ L HVVV TPGR++ +I
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVI 257
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 68.1 bits (159), Expect = 7e-13
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Frame = +3
Query: 219 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 374
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 375 ALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
+ L +C + +GG E Q+ G H+VV TPGR+ D +
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL 390
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 374
LA G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 375 ALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYD 500
+ + CIGG +++ +L +V+ TPGR D
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Score = 32.7 bits (71), Expect = 0.033
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 107 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 271
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 64.1 bits (149), Expect = 1e-11
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +3
Query: 207 ASKGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 374
A KGRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 375 ALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
+G + IGG N +E+ +L S ++++V TPGR+ I
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHI 175
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 62.9 bits (146), Expect = 3e-11
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Frame = +3
Query: 210 SKGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIQKVVI 374
+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECK 512
Query: 375 ALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMIT 509
LN + GG +++ I L+ G +VV TPGR+ D+++
Sbjct: 513 PFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLS 557
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 101 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 223
V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 61.7 bits (143), Expect = 6e-11
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 362
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 363 KVVIALGD----HLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYD 500
V L + H C+ IGG + + ++ GV++++GTPGR+ D
Sbjct: 234 NVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 60.5 bits (140), Expect = 1e-10
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 365
LA +G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 366 VVIALGDHLNAKCHACIGGTNVREDI--PQLESGVHVVVGTPGR 491
V+ L + TN + + P L +V+ TP R
Sbjct: 107 VLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 104 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 217
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 1e-10
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Frame = +3
Query: 216 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALG 383
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 384 DHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYD 500
+ + IGG N R + +L GV+++V TPGR+ D
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 101 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 271
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 8e-10
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +3
Query: 216 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGD 386
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 387 HLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
N K GG E + V++GTPGR+ D+I
Sbjct: 262 GTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLDLI 300
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.8 bits (131), Expect = 2e-09
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 368
+A GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 369 VIALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
G + GG I L GV + + TPGR+ DM+
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Score = 28.3 bits (60), Expect = 0.71
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 101 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 196
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 5e-08
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Frame = +3
Query: 204 LASKGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 329
+ + GRD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 330 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
APTREL QI + + A GG ++R I Q++ G ++ TPGR+ D+I
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLI 320
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.4 bits (115), Expect = 2e-07
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Frame = +3
Query: 219 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQKVVIALGDHLN 395
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI + L +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 396 AK-CHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
K ++E P+L + +GTP R+ I
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI 181
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.6 bits (113), Expect = 3e-07
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Frame = +3
Query: 210 SKGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGD 386
S G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 171 SYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMS 230
Query: 387 HLNAKCHACIGGTNVREDIPQL-----ESGVHVVVGTPGRVYDMI 506
+ A G ++R + QL E + V+V TPGR+ D I
Sbjct: 231 GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHI 275
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 49.2 bits (112), Expect = 4e-07
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Frame = +3
Query: 213 KGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL- 380
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V L
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELL 96
Query: 381 ---------GDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMIT 509
G L A + GT + E VV+GTPGR+ +M++
Sbjct: 97 AYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLS 148
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 8e-06
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Frame = +3
Query: 222 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 386
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 387 HLNAKCHACIGG-TNVREDIPQLESGVHVVVGTPGRVYD 500
+ IGG + +RE+ ++++ TPGR+ D
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 0.23
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 216 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 374
G VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLI 377
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 282 LQQIDTSIRECQALILAPTRELAQQIQK 365
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 246 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 362
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 278 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 379
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 392 QVITKSYHHLLNLLGQLSCGSQDQ 321
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 68 GDT*HRTGDQVVETFDDMNLK 130
GD RTG+++++ FD +NL+
Sbjct: 118 GDYPARTGNEIIDEFDQLNLQ 138
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 357 IQKVVIALGDHLNAKCHACIGGTNVRED 440
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -1
Query: 94 IPSAVSSVPRVPF--PEVPS*LP 32
+PSA+SS+ PF P +PS +P
Sbjct: 283 VPSALSSISSTPFMKPSIPSTIP 305
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 452 QLGNIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 351
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 324 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGT 482
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,937
Number of Sequences: 5004
Number of extensions: 52641
Number of successful extensions: 204
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -