Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4634
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       68   5e-14
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 68.1 bits (159), Expect = 5e-14
 Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
 Frame = +3

Query: 216 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQKV 368
           GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI + 
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQ 292

Query: 369 VIALGDHLNAKCHACIGGTNVREDIPQLESGVHVVVGTPGRVYDMI 506
           ++    +   K     GGT+V     +L +G H++V TPGR+ D +
Sbjct: 293 IVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFV 338



 Score = 28.7 bits (61), Expect = 0.037
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 95  QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 223
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A +P I   R
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA-LPIIMNGR 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 241 SQELEKLLLSLYRFYNKSIQAFVNV 315
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 432 GHWCHQCKHGI*HSS 388
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +1

Query: 124 PQRRIVERHIRLWF*KTFC----NPATRNNAL 207
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 68 QGPIPGGP 45
          QGP PGGP
Sbjct: 44 QGPPPGGP 51


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 410 LHWWHQCP 433
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 477 PPPHEHHSPVGEYLHGHW 424
           PP H HH       H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 498 HIHDLECPPPHEHHSPVGEYLHGH 427
           HIH      PH HHS      H H
Sbjct: 425 HIH----ATPHHHHSHAATPHHQH 444



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 501 YHIHDLECPPPHEHHSPV 448
           +H H     P H+H +P+
Sbjct: 431 HHHHSHAATPHHQHSTPL 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,234
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)