Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4632
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    30   1.5  
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   4.7  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   8.2  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    27   8.2  

>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 346 GQTPTKSQENTTGKRINRNSIVILKTI 266
           GQ  T ++  TTGKRI +  +V L+T+
Sbjct: 337 GQGKTSARRKTTGKRIQKRDVVDLRTL 363


>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 52  VRLAFFSLYVYIYTLYFDAHVVLW 123
           ++L F SL +Y+   YFD  +V+W
Sbjct: 337 LKLCFVSLSLYLKDTYFDESIVVW 360


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 395 HYNTYNPNLHIYKKHGRPDPYQEPR 321
           HY  YNP +  Y+++G+   Y +P+
Sbjct: 259 HYPGYNPYMQQYQQYGQYQQYTQPQ 283


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 385 RTIPTCTFTKNTGGQTPTKSQENTTGKRINRNSIVILKTIPK 260
           RTIP+     N GG  P K  ++ T      +S   LKT+PK
Sbjct: 324 RTIPSM----NHGGDRPGKENQSCTTNSFRDHSRFPLKTVPK 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,079
Number of Sequences: 37544
Number of extensions: 292112
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)