Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4632
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.24 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.54 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.54 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   0.95 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.1  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   6.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 73  LYVYIYTLYFDAHVVLW 123
           ++ Y++ LY D HV++W
Sbjct: 47  MFTYLHLLYQDVHVMIW 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 223 LVGGPACANSISAPRNSYNDMTISFRY*KL*CLTIK-----LHVHQNIKCKYIRT---VK 68
           LVG  AC   +     S  +MT++F    + C+  K     L + + I+    RT    K
Sbjct: 116 LVGKEACKQGVCTVEVSSENMTVTFANLGIQCVKKKDIEEALKIREEIRVDPFRTGFEHK 175

Query: 67  RTQGELDYNLVLIIF 23
           R    +D N V + F
Sbjct: 176 RQPTSIDLNAVRLCF 190


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 223 LVGGPACANSISAPRNSYNDMTISFRY*KL*CLTIK-----LHVHQNIKCKYIRT---VK 68
           LVG  AC   +     S  +MT++F    + C+  K     L + + I+    RT    K
Sbjct: 116 LVGKEACKQGVCTVEVSSENMTVTFANLGIQCVKKKDIEEALKIREEIRVDPFRTGFEHK 175

Query: 67  RTQGELDYNLVLIIF 23
           R    +D N V + F
Sbjct: 176 RQPTSIDLNAVRLCF 190


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 380 CTYCNVRYRVSNS 418
           C +CN RYR  NS
Sbjct: 38  CEFCNRRYRTKNS 50


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 555 CISVYVISKLFSVKKERNERF 493
           CI  Y ++K+    K+ N+R+
Sbjct: 70  CIGYYKLNKIHDAYKDLNQRY 90


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 8  IVRGIENN*D*IIVKFALR 64
          ++R + NN D ++VK  LR
Sbjct: 35 LIRPVSNNNDTVVVKLGLR 53


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 IRFPVVFSWLLVGVWPPVFF 359
           I FP++F   ++  WP + F
Sbjct: 368 IGFPILFMLFIILYWPILLF 387


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 469 CDCKRDTFKPFI 504
           C+CKR   KP I
Sbjct: 30  CNCKRHVIKPHI 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,762
Number of Sequences: 438
Number of extensions: 4085
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)