Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4629
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    31   0.053
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     27   0.65 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   2.6  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 30.7 bits (66), Expect = 0.053
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 264 FFFLFCIYKRLECTGSFD 211
           FFFLFC   R+ CTG F+
Sbjct: 10  FFFLFCFIIRISCTGVFE 27


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 63  YLYMST---FVLNIFIFF*YYRTFEQWQCENEVKVYLVF 170
           YLY  T   F++NI+ F+ Y    E +      K Y+++
Sbjct: 64  YLYAGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIY 102


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 29  FNLRLLITIIIVFIYVDFCPKYFYIFLILPYI 124
           FN+  L+  I +F Y+   P ++Y + + P I
Sbjct: 490 FNIPFLL--ICIFFYIQSSPPFYYGYALFPTI 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,798
Number of Sequences: 5004
Number of extensions: 20945
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)