Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4629
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0079 - 17944260-17944462,17944742-17945073,17945663-179456...    27   3.1  
02_03_0224 - 16577234-16577494,16577798-16577996,16578069-165781...    26   7.2  
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800...    26   7.2  
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012...    25   9.5  
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435     25   9.5  
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    25   9.5  

>01_05_0079 -
           17944260-17944462,17944742-17945073,17945663-17945691,
           17946135-17946208,17946293-17946449,17946653-17946655
          Length = 265

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 91  IFLYFFNITVHLNNGSVKMK*KYTLYFMINI 183
           IFLY + + + + NG  K+K  Y LY M +I
Sbjct: 59  IFLYIYGMILIVQNGLKKIK-AYPLYLMFDI 88


>02_03_0224 -
           16577234-16577494,16577798-16577996,16578069-16578139,
           16578442-16578517,16578632-16578762,16578853-16578978,
           16579075-16579248,16579414-16579484,16579752-16579923,
           16581780-16581892,16582705-16582779,16582913-16583009,
           16583448-16583534,16583535-16583589,16583650-16583828
          Length = 628

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  FNLRLLITIIIVFIYVDFCPKYFYIF 106
           FN +   T ++ F Y+ FC K++  F
Sbjct: 34  FNRKGYFTCLLFFFYLSFCVKFYIKF 59


>01_06_1675 +
           39078774-39078890,39079607-39079723,39079950-39080006,
           39080340-39080417,39080553-39080597,39080872-39080931,
           39081149-39081271,39081850-39081927,39082056-39082125,
           39082612-39082719,39082962-39083095,39083177-39083247,
           39083384-39083432,39083507-39083557
          Length = 385

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 180 INHKIQGILLLHFHTAIVQMYGNIK 106
           IN+ ++ ++ L+F+ A V+M GN+K
Sbjct: 114 INNYMKFVMQLYFNPATVKMLGNLK 138


>04_04_0776 -
           28000220-28000337,28000760-28000872,28001194-28001289,
           28001647-28001763,28002136-28002267,28002348-28002524,
           28002660-28002837,28003270-28003373,28003922-28003996
          Length = 369

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 182 YLKCCYIKE*SKLPVHSNLLYIQNKKKK 265
           Y K  Y KE +K   HS++LY+    KK
Sbjct: 220 YFKAVYAKERAKERGHSDVLYLDPVHKK 247


>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
          Length = 1072

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -2

Query: 207 SFI*QHLRYINHKIQGILLLHFHTA-IVQMYGNI--KKI*KYLGQKSTYXXXXXXXXXNL 37
           S + +H  ++N+ +  + +LH   A ++ +  +I   K  +YLG K TY         NL
Sbjct: 585 SIVTKHKNFLNN-LSCLRVLHLEDANLIVLPDSICHLKHLRYLGLKGTYISALPNLIGNL 643

Query: 36  KLKYYMLECGCL 1
           +   ++  CGC+
Sbjct: 644 RFLQHIDLCGCI 655


>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 176 LIYLKCCYIKE*SKLPVHSNLLYIQNKKKKKTR 274
           L YL+   IK+  K P H  + YIQ+  +K TR
Sbjct: 554 LFYLRIFDIKK--KCPYHKIVRYIQHSNEKVTR 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,943,177
Number of Sequences: 37544
Number of extensions: 102770
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)