Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4629
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    27   3.6  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    26   4.8  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    26   4.8  
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z70755-4|CAA94783.2|  239|Caenorhabditis elegans Hypothetical
           protein K06A4.4 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 238 FVYTKQKKKKNSRGGPVP 291
           FVY  +KKKKN +  P+P
Sbjct: 219 FVYPTEKKKKNLKSSPIP 236


>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 41  LLITIIIVFIYVDFCPKYFYI 103
           LL++ +++F+Y    P YFY+
Sbjct: 20  LLVSAVLIFVYSVILPFYFYV 40


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 303 IGRIGYRAPPRVFFFFLFCIY 241
           IG  G+ APP VF FF +  Y
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGY 368


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 303 IGRIGYRAPPRVFFFFLFCIY 241
           IG  G+ APP VF FF +  Y
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGY 366


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  RLLITIIIVFIYVDFCPKYFYIFLI 112
           R+LIT++IVF +  + P Y Y  L+
Sbjct: 281 RMLITLVIVFAFC-WVPSYLYWLLL 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,609,469
Number of Sequences: 27780
Number of extensions: 115451
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)