Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4622
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.20 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   5.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   5.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 573 DHMSHLVNWNAQSVGLL-HVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 406
           D  S L++     + ++  ++   + L L +  D +  L    Y EY ++E+G++ S
Sbjct: 363 DQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELAS 419


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 198 FDFFFLCI-LFGCMGYFRFSRHIRFYNKSRNSS 103
           F  FFL I +F    Y   S  I +YN + N +
Sbjct: 431 FPLFFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 220 EKTIEEI--LAADQEDESLRKYKEALLGQ 300
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 220 EKTIEEI--LAADQEDESLRKYKEALLGQ 300
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 388 HRAQPHTMLASSLSLCEDH 332
           H A  H +L  S  LCE H
Sbjct: 282 HHANHHAILGHSGFLCERH 300


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 208 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAV 318
           +P P + ++ + A+   + +  +YK  ++    AGAV
Sbjct: 45  QPIPNQELQNLGASYDIESNSHQYKNPIIVMYYAGAV 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,442
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)