Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4620
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792...    28   5.5  
08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018     28   5.5  
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    28   5.5  
01_06_1724 - 39452858-39454309                                         28   5.5  
08_01_0827 + 8016704-8017150                                           28   7.2  
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     27   9.6  
07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    27   9.6  

>09_04_0367 -
           16978069-16978085,16978514-16978611,16979069-16979229,
           16979320-16979548,16979731-16980593
          Length = 455

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   ARGSAYRSWGRVYRE*TRHGHGLILYAGG 93
           ARGS YR     YR+  RHGHG+  +  G
Sbjct: 219 ARGSRYRGQ---YRQGLRHGHGVYRFYSG 244


>08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018
          Length = 418

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   ARGSAYRSWGRVYRE*TRHGHGLILYAGG 93
           ARGS YR     YR+  RHGHG+  +  G
Sbjct: 219 ARGSRYRGQ---YRQGLRHGHGVYRFYSG 244


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 434 GLVRSSTRTVTGA*VPKSTVNGSGGSVMTCFGRRRLFTIR 315
           G   ++T  +    VP+    G GG++M   GR R + +R
Sbjct: 107 GAATTTTARMQACIVPQEAAVGGGGAMMAVVGRSRQYVLR 146


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 131 QVPGRYPGCIDDIPPAYKISP*PCRVY 51
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>08_01_0827 + 8016704-8017150
          Length = 148

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 PKHVITDPPDPLTVLLGTQAPVTVLVDERTSP*TQPTEFLAGSSQWIAFPIRW-*IPGSP 516
           P+ ++  PP P    +G    +T      T+P    T  L  S    A P  W   P +P
Sbjct: 9   PRPLLPSPPPPRRQEVGAAVRLTTRFPMTTAPSGSATSALCRSCSSAAAPSPWPCAPTTP 68

Query: 517 ALARASVS 540
              RAS +
Sbjct: 69  PCGRASTA 76


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   ARGSAYRSWGRVYRE*TRHGHGLILYAGG 93
           ARGS YR     YR+  RHGHG+  +  G
Sbjct: 195 ARGSRYRGQ---YRQGLRHGHGVYRFYTG 220


>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 307 LGDRMVNSRRRPKHVITDPPDPLT 378
           LG  +    RRP H++  PP PLT
Sbjct: 6   LGHAVTGRLRRPLHLLHPPPPPLT 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,574
Number of Sequences: 37544
Number of extensions: 447902
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)