Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4619
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 255 FLETSHIYSHKNYLYVETIFQHVSVYLFFAHPMVSGIQVLIHTFRGTTSTHI 100
           FL T   YSH+  ++VE +     + + F H   +  + L+  F+ TTS ++
Sbjct: 144 FLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQ-TTSQNL 194


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 581 FNLLFPLQRNFEQLCPGLSRSDNFTIKCKI 492
           +N+  PL  N E   P L  S+N+T  C I
Sbjct: 164 WNMTDPLVVNPEIELPQLDISNNYTTDCTI 193


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 592 VIDNLIYYSHYNETLSNYVQGSVDL---IILLS 503
           ++DNL+  + Y++ L   VQG++ +   ++LLS
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLS 96


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 592 VIDNLIYYSHYNETLSNYVQGSVDL---IILLS 503
           ++DNL+  + Y++ L   VQG++ +   ++LLS
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLS 96


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 592 VIDNLIYYSHYNETLSNYVQGSVDL---IILLS 503
           ++DNL+  + Y++ L   VQG++ +   ++LLS
Sbjct: 64  ILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLS 96


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 87  EQWR*YVSMLCL*RCV*GLEYHLPLDXXXXXXXXHVERLFQ 209
           E W   +++    +C+ G +Y LP+         ++ER+ Q
Sbjct: 463 EPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 153 SGIQVLIHTFRGTTSTHITATVLHYEFFIYHTIQNR*ILVFCLKSIDAI 7
           + + V++    G   TH    V     F +H+I NR   +F L +++ I
Sbjct: 229 NSLMVILPDLVGKKITHFFDLVRPLIAFKFHSILNRTNNIFELVTVEPI 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,475
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)