Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4618
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    28   3.3  
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 258 VPGGIGCLASSLVLPLLEYLIA 193
           V  GIG  A  +++PLL YLIA
Sbjct: 216 VAPGIGLFAQFIIMPLLSYLIA 237


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = +2

Query: 179 HVSSSAIKYSSNGST------NDDARQPIPPGTRPKEP 274
           ++S   +KYSSNG+T      NDD  + +PP   PK+P
Sbjct: 96  NISPLNVKYSSNGATLLLTIGNDD--RYVPPVNFPKKP 131


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 285 MTPVKVVHTARRRQPSQRFAGTLRRDILIRH--PPP 386
           + P  VV   +++Q  Q+  GT+R+  + RH  PPP
Sbjct: 314 VAPGSVVQQQQQQQMQQQNYGTIRKSTVNRHDLPPP 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,505,293
Number of Sequences: 27780
Number of extensions: 122428
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)