Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4618
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.5  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   3.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   4.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 185 SSSAIKYSSNGSTNDDARQPIP 250
           SS+    S NG+TN  AR   P
Sbjct: 535 SSNVNNNSGNGNTNSSARDSSP 556


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 194 AIKYSSNGSTNDDARQPIPPG 256
           A+++++     DD  QP PPG
Sbjct: 116 ALEWNAAHPEEDDGGQPRPPG 136


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 349 VPANLWLGWRRRAV 308
           +PA  WLGW   A+
Sbjct: 341 MPALTWLGWINSAI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,461
Number of Sequences: 438
Number of extensions: 1528
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)