Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4617
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical ...    28   3.6  
AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    27   8.4  

>AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical
           protein B0348.1 protein.
          Length = 87

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 202 NYQHYTRYIPRCQCN 158
           +Y+ Y+ Y P+CQCN
Sbjct: 15  HYEPYSEYCPKCQCN 29


>AC006614-1|AAF39762.2|  472|Caenorhabditis elegans Hypothetical
           protein C34H3.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 181 YIPRCQCN-----KIDDCLYICNLHYNCTVRELI 95
           Y+P C C      K D CL I    ++CTV++ +
Sbjct: 191 YVPNCLCTPKDSLKEDGCLKIPGFDHDCTVQQFV 224


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 409 NVYGLQ*PLNTRWAVSSSTHQSNKKKNSRGG 501
           N YG     N  W  SSS + +N   N+ GG
Sbjct: 421 NGYGSNNNRNDGWGSSSSNNNNNNNNNNNGG 451


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 409 NVYGLQ*PLNTRWAVSSSTHQSNKKKNSRGG 501
           N YG     N  W  SSS + +N   N+ GG
Sbjct: 421 NGYGSNNNRNDGWGSSSSNNNNNNNNNNNGG 451


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 531 RLTIGRIGYRAPP-RVFFFIALMCGRAHSPPGVKWLL 424
           RLT   I Y A P  VF F  ++C   +    +KWLL
Sbjct: 16  RLTFHLITYLAIPLHVFGFYCIICKTPNHMRSIKWLL 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,857,548
Number of Sequences: 27780
Number of extensions: 269611
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)