Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4616
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 184 1e-47
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 61 2e-10
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 30 0.33
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 30 0.44
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 29 1.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 28 1.8
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 2.3
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 4.1
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 4.1
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 5.4
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 26 5.4
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 7.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 7.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 9.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 25 9.4
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 184 bits (449), Expect = 1e-47
Identities = 92/181 (50%), Positives = 123/181 (67%), Gaps = 4/181 (2%)
Frame = +1
Query: 253 LNRFYSAT--SYTKVPRVCIVGAGPAGFYAAMHLTKNI-QCKIDLIEKLPVPFGLIRYGV 423
L+RF T + T P V I+G+GPA FY A L +N KID+ E PVPFGL+RYGV
Sbjct: 2 LSRFIKRTYSTQTSSPVVGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGV 61
Query: 424 APDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLG 603
APDHPEVK+V ++F+++A+ + F GNV +G D++L L ++YD ++L YGA DK LG
Sbjct: 62 APDHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLG 121
Query: 604 IENENAKNVIGARHFVGWYNGLPSNKDLEIDLS-CDTAAILGQGNVALDVARILLSPIGE 780
I E+ V AR VGWYN P N++LE+DLS + A ++G GNV+LDVARILLS +
Sbjct: 122 IPGEDLSGVYSAREVVGWYNSDPRNQNLELDLSQVEDAVVIGHGNVSLDVARILLSNPAQ 181
Query: 781 L 783
L
Sbjct: 182 L 182
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 61.3 bits (142), Expect = 2e-10
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +1
Query: 295 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 474
RV I+G+GPAG AA L + + + E+ P GL++YG+ P+ K V+ + ++
Sbjct: 1757 RVAIIGSGPAGLAAADQLNR-AGHHVVIYERADRPGGLLQYGI-PNMKLDKKVVERRIQL 1814
Query: 475 AQRPEVNFYGNVTLGK--DITLNQLRQHYDAVLLTYGAEKDKTLGIENENAKNVIGARHF 648
+ NV +GK D++L++L + YDAV+L G+ + L I N ++K + A F
Sbjct: 1815 MIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVVLASGSTVPRDLPIPNRDSKGIHFAMEF 1874
Query: 649 V 651
+
Sbjct: 1875 L 1875
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 220 LNKMTFGNLRTLNRFYSATSYTKVPRVCIVGAGPAGFYAAMHLTK-----NIQCKIDLIE 384
LN++T NLR L+ V CIVGAGPAG AA+ + + N ++ ++E
Sbjct: 71 LNELT-DNLRKLDTIEREVEDVDV---CIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLE 126
Query: 385 KLPVP 399
K P
Sbjct: 127 KAAEP 131
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 298 VCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVP 399
V IVGAG G AA+ LTK I ++++ P P
Sbjct: 7 VIIVGAGVFGLSAALELTKRGGYTIKILDRAPPP 40
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 520 KDITLNQLRQHYDAVLLTYGA-EKDKTLGIENENAKNVIGARHFVGW 657
KD+ + + Y+ V+ G +KDK + +++ N++GAR F GW
Sbjct: 143 KDLIAKPMPEMYERVMREAGVTDKDKCIFVDDSYG-NILGAREF-GW 187
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 310 GAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKVAQRPE 489
GAG + L +N+Q + ++PV L R G DHP VKN+I +
Sbjct: 349 GAGSSLLENPGRLLRNLQGMDAVSGQIPVTVKL-RMGNKDDHPVVKNLIGRIFNETNTSA 407
Query: 490 VNFYG 504
+G
Sbjct: 408 ATLHG 412
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.5 bits (58), Expect = 2.3
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Frame = +1
Query: 268 SATSYTKVPRVCIVGAGPAGFYAAMHL-TKNIQCKIDLIEKL-PVPFGLIRYGVAPDHPE 441
S + P VCI+G G AA +L KN + KI + + VP+ + + H +
Sbjct: 150 SVETEVTAPHVCIIGGGKGASVAAEYLREKNFKGKITIFTREDEVPYDRPKLSKSLLH-D 208
Query: 442 VKNVINQFTKVAQRPEVNFYGNVTLGK-DITLNQL--------RQHYDAVLLTYGAEKDK 594
+ + + + +++F+ N + K D+ ++ + Y ++L G E +K
Sbjct: 209 ISKLALRSKEYYDDLDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLILATGGEPNK 268
Query: 595 TLGIENENAKNV 630
L I ++KNV
Sbjct: 269 -LPIPGLDSKNV 279
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 415 YGVAPDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLR 546
+ A H EV + ++FT+ + P++ +V + DI L++ R
Sbjct: 201 FASADSHSEVARLADEFTRDSGLPDLENLSHVNVLLDIALDKFR 244
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Frame = -1
Query: 647 KCLAPITFLAFSF-----SIPRVLSFSAP 576
K L ITFL FSF +P VLSFSAP
Sbjct: 57 KPLQIITFLFFSFLTSFNDLPYVLSFSAP 85
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 295 RVCIVGAGPAGFYAAMHLTK 354
+V I+G+GPAG AA++L +
Sbjct: 5 KVVIIGSGPAGHTAAIYLAR 24
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 199 FP*VC*NLNKMTFGNLRTLNRFYSA-TSYTKVPRVCIVGAGPAGFYAAM 342
F C +++ + R YSA S +C++G GP G+ AA+
Sbjct: 14 FKFTCLQVSECRPAQIEISKRLYSAKASGNGEYDLCVIGGGPGGYVAAI 62
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 708 HGCYSWSRQCSSRCCKNT 761
H C + + CSS CCKNT
Sbjct: 397 HCCKTDTGCCSSSCCKNT 414
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 247 RTLNRFYSATSYTKVPRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEK 387
RT R++ TS+ + V ++G G AG AA ++ + K L+ K
Sbjct: 3 RTTKRYF-CTSFNRRKNVVVIGGGHAGVEAAAAASR-LGAKTTLLTK 47
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 442 LQGDLELHHILLIRRV-PEVFLLNQFCIVC 356
++G++EL +I + PEV +L+ F +VC
Sbjct: 416 IKGEIELKNIRFVYPTRPEVLVLDNFSLVC 445
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 194 SGFH--ESVKI*TR*-LSEI*EL*TDFIQQLVTQKFLEY 301
SGF+ E +++ R L ++ EL +D++ V QKF EY
Sbjct: 177 SGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEY 215
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 9.4
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -3
Query: 486 WSLSHFGKLIYHIFYFRVIWSYTI 415
W + +++ + FY V+W++T+
Sbjct: 1061 WDYNRVAEMVNNFFYKSVVWTFTL 1084
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 289 VPRVCIVGAGPAGFYAAMH-LTKNIQCKIDLIEKLPVPFGLIRY 417
+ ++ I+GAGP+G A L + ++ L E+ P G+ Y
Sbjct: 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,765
Number of Sequences: 5004
Number of extensions: 63635
Number of successful extensions: 178
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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