Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4616
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...   164   6e-41
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    29   3.8  
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    29   3.8  
Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    28   6.7  

>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score =  164 bits (399), Expect = 6e-41
 Identities = 80/159 (50%), Positives = 104/159 (65%), Gaps = 2/159 (1%)
 Frame = +1

Query: 292 PRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTK 471
           PR+ IVG+GPAG +A   L +     +D+ E  PVPFGL+RYGVAPDH EVKNVIN F  
Sbjct: 26  PRLAIVGSGPAGMFACNGLLRKSNFSVDVFENSPVPFGLVRYGVAPDHQEVKNVINTFDA 85

Query: 472 VAQ--RPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLGIENENAKNVIGARH 645
           + +  R  +  + NV +G+DIT ++L + YDAVLL YG+ K +TL I   +A NVI    
Sbjct: 86  MFEKNRERLKLFCNVNIGRDITFDELTRGYDAVLLAYGSYKTRTLDIPGSDASNVISGSE 145

Query: 646 FVGWYNGLPSNKDLEIDLSCDTAAILGQGNVALDVARIL 762
           FVGWYNG+P+      DL+     I+G GNVALD AR+L
Sbjct: 146 FVGWYNGVPNAS--TPDLTTSNVVIVGNGNVALDCARVL 182


>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
 Frame = +1

Query: 295  RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 474
            R+ I+G+GP+G  AA  L K +   + + E+     GL+RYG+ P     K V+++   +
Sbjct: 1848 RIAIIGSGPSGLGAAAQLVK-VGHTVVVYERKNRVGGLLRYGI-PTMKLDKFVVDRRVSL 1905

Query: 475  AQRPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLGIENENAKNVIGARHFVG 654
             ++  V F  N  +GK +  + L +  DA+++  G+   + L +E  +AK V  A  ++ 
Sbjct: 1906 LEQEGVRFLTNTEIGKHVPADFLLKENDAIIVCTGSTTARDLNVEGRDAKGVCFAMEYLE 1965

Query: 655  WYNGLPSNKDLE---IDLSCDTAAILGQGNVALD 747
                  +  D+    +D +     ILG G+ A D
Sbjct: 1966 KSQRRRAGDDVSWEGLDPANKKVIILGGGDTATD 1999


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
 Frame = +1

Query: 295  RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 474
            R+ I+G+GP+G  AA  L K +   + + E+     GL+RYG+ P     K V+++   +
Sbjct: 1848 RIAIIGSGPSGLGAAAQLVK-VGHTVVVYERKNRVGGLLRYGI-PTMKLDKFVVDRRVSL 1905

Query: 475  AQRPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLGIENENAKNVIGARHFVG 654
             ++  V F  N  +GK +  + L +  DA+++  G+   + L +E  +AK V  A  ++ 
Sbjct: 1906 LEQEGVRFLTNTEIGKHVPADFLLKENDAIIVCTGSTTARDLNVEGRDAKGVCFAMEYLE 1965

Query: 655  WYNGLPSNKDLE---IDLSCDTAAILGQGNVALD 747
                  +  D+    +D +     ILG G+ A D
Sbjct: 1966 KSQRRRAGDDVSWEGLDPANKKVIILGGGDTATD 1999


>AF043700-8|AAB97574.2|  374|Caenorhabditis elegans Hypothetical
           protein K09H9.1 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = -2

Query: 418 HILLIRRVPEVFLLNQFCIVCFS*DAWRHKSLQDQLQQYXXXXXXXXXXXXXXXXKFLNF 239
           +I+L   +PE+F  ++ C    + D W  +++Q   +Q                    N 
Sbjct: 279 NIILCDEIPEIFHSSENCKSDDTSDCWHLETIQPIPEQKANQFYGDDTILTGKCFCLKNL 338

Query: 238 RKSSCLNFNRLME 200
           R +SC+N+  L E
Sbjct: 339 RLNSCINYQLLFE 351


>Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical
           protein C01H6.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 295 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEK 387
           ++CI+GAG AG  +A H  K    ++D+ E+
Sbjct: 4   KICIIGAGAAGLVSAKHAIKQ-GYQVDIFEQ 33


>U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical
           protein C46H11.2 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 295 RVCIVGAGPAGFYAAMH-LTKNIQCKI 372
           RVC++GAG AG  AA H L + ++ ++
Sbjct: 4   RVCVIGAGAAGLAAAKHSLAQGLEVEV 30


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 274 TSYTKVPRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEK 387
           +S TK    C++G+G AG   A HLTK     + L+E+
Sbjct: 22  SSSTKHVFACVLGSGVAGSSVAYHLTKRNIKDVLLLER 59


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 274 TSYTKVPRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEK 387
           +S TK    C++G+G AG   A HLTK     + L+E+
Sbjct: 22  SSSTKHVFACVLGSGVAGSSVAYHLTKRNIKDVLLLER 59


>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 265 YSATSYTKVPRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPV 396
           +SA      P   IVGAG AG   A  LT++   ++ LIE  PV
Sbjct: 29  FSADIAENKPTHIIVGAGSAGCVLANRLTEDPSNRVLLIEAGPV 72


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 165 EIQTRLGVVFLVSMSLLKFKQDDFRKFKNFEQI-LFSN 275
           ++ TR   V +V+  LLK     +RKF++F +I +FSN
Sbjct: 829 DLDTRERCVLMVNNWLLKEATPGYRKFQSFREIAIFSN 866


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,618
Number of Sequences: 27780
Number of extensions: 350945
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)