Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4614
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    29   0.93 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   5.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   5.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.7  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = -3

Query: 740 ISMLFAIYINSVSNHLIS---------SYHLYADDLQLYTQAPVEELPLACTKVNNDLLS 588
           ++M++ +  NS+ +HL+          +YHLY D+    ++ P +EL     + N DL +
Sbjct: 214 VAMVYTVEQNSLDDHLVDKVLFDYLVRTYHLYLDESPEESE-PEKELKATFNQQNQDLYN 272

Query: 587 ITNWSKS 567
            T   KS
Sbjct: 273 QTEALKS 279


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 668 DDLQLYTQAPVEELPLACTKVNNDLLSITNWSKSYGLQINPTKTQVIIVGAPRRLATVDW 489
           ++LQ+ + + +EE+      +    LS TN  K +    NP+       G  R LA   W
Sbjct: 157 ENLQIKSSSSLEEINKIPENIVTQSLSYTNLLKKFETSPNPSNN-----GCFRSLALSGW 211

Query: 488 TRIP 477
             +P
Sbjct: 212 NPVP 215


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -3

Query: 620 ACTKVNNDLLSITNWSKSYGLQINPTKTQVIIVGA----PRRLATVDWT 486
           A T   ND+ S  N   S+ +  NPT  +V I GA    P   A VD T
Sbjct: 497 AATHDLNDVKSYYNTRSSHSVVPNPTNQKVSITGAAADGPNGSAPVDTT 545


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 375 NLSKDLCGCRILKTSAKFS-PYCHQDCAC 292
           N  K  CG ++LK++ KF+ P     C C
Sbjct: 97  NRIKSRCGSKVLKSTTKFTIPKTAAKCLC 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,456
Number of Sequences: 5004
Number of extensions: 66836
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)