Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4614
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334     32   0.42 
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264...    30   2.2  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    29   3.0  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   3.0  
09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607           29   3.9  
04_04_1260 + 32179648-32179807,32179926-32180026,32180400-321805...    28   9.1  

>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
          Length = 554

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -3

Query: 362 IYAAAGSLRRLRNFLPTATKTALAQSLLLPILDYADVSYLDL 237
           +YAA      L N+LPTA K + A+S L+ +L Y+  S+ DL
Sbjct: 446 LYAAGADDNALANYLPTALKGS-ARSWLMHLLPYSISSWADL 486


>12_01_0343 +
           2640822-2641106,2641488-2641556,2641708-2641887,
           2642015-2642081,2643237-2644015
          Length = 459

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = -3

Query: 665 DLQLYTQAPVEELPLACTKVNNDLLSITNWSKSYGLQINPTKTQVIIVGAPRRLATVDWT 486
           D+   T  P  +L       N    +I N  K   ++ +    QVII G P R   + W 
Sbjct: 243 DINTKTVVPRSDLDTLDRNYNAVNATIVNNGKDITMKFHGEVGQVIIAGKPYRFQAIHWH 302

Query: 485 RIPPISIDGVQIPV 444
                +I+G + P+
Sbjct: 303 APSEHTINGRRFPL 316


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 362 IYAAAGSLRRLRNFLPTATKTALAQSLLLPILDYADVSYLDL 237
           +YAA      L N+LPTA K + A+S L+ +  Y+  S+ DL
Sbjct: 217 LYAAGADDNALANYLPTALKGS-ARSWLMHLPPYSISSWADL 257


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 362 IYAAAGSLRRLRNFLPTATKTALAQSLLLPILDYADVSYLDL 237
           +YAA      L N+LPTA K   A+S L+ +  Y+  S+ DL
Sbjct: 467 LYAAGADDNALANYLPTALK-GYARSWLMHLPPYSISSWADL 507


>09_02_0291 - 6980273-6980737,6980893-6981239,6981259-6981607
          Length = 386

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 362 IYAAAGSLRRLRNFLPTATKTALAQSLLLPILDYADVSYLDL 237
           +YAA      L N+LPTA K++ A+S L+ +  Y+  S+ DL
Sbjct: 259 LYAARVDDNALANYLPTALKSS-ARSWLMHLPPYSISSWADL 299


>04_04_1260 +
           32179648-32179807,32179926-32180026,32180400-32180530,
           32180762-32181094,32181305-32181407
          Length = 275

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 582 KLE*ILWAANKSDKNSGHYCRCT 514
           ++E   WAAN +D ++G   RCT
Sbjct: 163 RVEGCAWAANATDSDAGEVARCT 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,106,204
Number of Sequences: 37544
Number of extensions: 421617
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)