Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4614
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    55   5e-08
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    32   0.50 
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    30   1.5  
AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 8/245 (3%)
 Frame = -3

Query: 734  MLFAIYINSVSNHLISSYHL--YADDLQLYTQAPVEELPLACTKVNNDLLSITNWSKSYG 561
            +LF ++IN++   L  + ++  +ADD++++   P        T + N +  I +WSK   
Sbjct: 890  LLFILFINNLLIDLAPTINISCFADDVKIFHTDP--------TIIQNSIDIIVSWSKLNE 941

Query: 560  LQINPTKTQVIIVGAPRRLATVDWTRIPPISIDGVQIPVSDKVRNLGIFVDRHMSWDAQI 381
            L + PTK+ ++ +G   +  +         S+DGV I  S  VR+LG+  D  + ++  I
Sbjct: 942  LPLAPTKSALLALGTRNKNQSY--------SVDGVPITPSSTVRDLGLITDCKLKFEHHI 993

Query: 380  -KETCRKIYAAAGSLRRLRNFLPTATKTALAQSLLLPILDYADVSYLDLTEAQLN-KLER 207
             K +C  +  +   L+   +  P      L ++ + PI++Y    Y   + + L+ KLE+
Sbjct: 994  VKVSCLAMLRSKQILKAFSSNSP-KFYAHLYKTYVAPIMNYCSEVYAPHSNSVLSAKLEQ 1052

Query: 206  -LQNFCLRFIFGLRKYDHVSEFRAKLKWLPIRLRRNAHI---LSLLYTVLFNPSSPSYLK 39
             L++F  R +   R     S +  +L  + +   R+  I   L +LY +L   S  S L+
Sbjct: 1053 PLRHFTKRVL--QRCNTKFSSYENRLSIMELHSTRHNRIKAQLKVLYRLLTGTSHFSNLR 1110

Query: 38   RRFEF 24
            +   F
Sbjct: 1111 QFVTF 1115


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
 Frame = -3

Query: 734 MLFAIYINSVSNHLIS--SYHLYADDLQLYTQAPVEELPLACTKVNNDLLSITNWSKSYG 561
           +LF IY+N +S+ L    +   +ADD +LY   P  E   +   + + L ++ +W+K   
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE---SENNLQSALDAVVDWTKGSK 142

Query: 560 LQINPTKTQVIIVGAPRRLATVDWTRIPPISIDGVQIPVSDKVRNLGIFVDRHMSWDAQI 381
           L +N +KT  + VG  R    +D+       +DG  I      R+LG  +   + +    
Sbjct: 143 LTLNQSKTVHVTVGKRR----IDF----KYHLDGYPIERKAITRDLGFLISEKLDFSDHW 194

Query: 380 KETCRKIYAAAGSLRRLRNFLPTATK---TALAQSLLLPILDYADVSYLDLTEAQLNKLE 210
           ++ C  I  A   L  + N   T+ K     L ++ + P L+Y  V      ++    +E
Sbjct: 195 RK-C--INLAKFQLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIE 251

Query: 209 RLQNFCLRFIF 177
            +QN   R ++
Sbjct: 252 SVQNAFTRRLY 262


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
            protein R11E3.3 protein.
          Length = 931

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 5/211 (2%)
 Frame = -3

Query: 731  LFAIYINSVSNHLISSYHLYADDLQLYTQAPVEELPLACTKVNNDLLSITNWSKSYGLQI 552
            LF  Y+  +     +    YADD+ +  +   +++  A  KV   +  I  + K  G+ I
Sbjct: 543  LFTFYLKDMPTQQDTMLISYADDMSIIARD--KKIEKAAEKVQLHIDEIAKYLKERGMSI 600

Query: 551  NPTKTQVIIVGA-PRRLATVDWTRIPPISIDGVQIPVSDKVRNLGIFVDRHMSWDAQIKE 375
            +  K+ V +    P+   T      P I      IPV +  + LGI ++        +  
Sbjct: 601  SAEKSTVTVFSCDPKEHKTK-----PDIYWMDDPIPVINAPKLLGITLNTMTGTKDHVGN 655

Query: 374  TCRKIYAAAGSLRRLRNFL---PTATKTALAQSLLLPILDYADVSYLDL-TEAQLNKLER 207
              + +      ++ +          T     Q+L+ P   Y   ++  L ++  L KLE 
Sbjct: 656  AIKSMQNKTRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTNLEKLEI 715

Query: 206  LQNFCLRFIFGLRKYDHVSEFRAKLKWLPIR 114
                 LR   GL K         + + LP++
Sbjct: 716  AYRSALRACVGLTKDTPTDHIYQECRVLPLK 746


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 336 TSAKFSPYCHQDCA--CTISSSP 274
           T  +F+P C Q CA  CTISS+P
Sbjct: 180 TCQQFAPVCQQQCAPQCTISSAP 202


>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +2

Query: 257 QHNQGWGEEEIVQAQSWWQ*GENFA----DVLRILQPHKSFDKFL*FVHPMTYAYLQRYP 424
           +HNQG   EEI  A   WQ G + +    D++R L+  KS  + L     +T A L+  P
Sbjct: 415 RHNQGVFGEEICFAHGRWQLGFSLSAFAVDLIRNLKDQKSEIQELWLDFSLTQARLRERP 474

Query: 425 SFSPYH*LVFELHQL 469
                  LV    QL
Sbjct: 475 DKEHIKILVLATRQL 489


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 748 GVLSPCSSRYILILSPTISFPPTTC--MQTISSFIRKPRWKNCLL 620
           G++  CS+ YI+ILS  I    T     +T+ +F+ +  W+  +L
Sbjct: 402 GIIEACSNYYIVILSDNIRLFKTDVNDRKTVETFLIEVYWRESIL 446


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 416 FVDRHMSWDAQIKETCRKIYAAAGSLRRLRNFLP 315
           FV+RH++++++ K      Y  A +++ LR F+P
Sbjct: 172 FVNRHLTFNSRHKSVLTVRYQLAENVKALRTFVP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,178,647
Number of Sequences: 27780
Number of extensions: 367511
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)