Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4613
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +1

Query: 73   ELTGLKPDDDANTNPSKSRASQNLPPDQKRDPLRRSGEK 189
            ELT LK D +AN N S +R   +    +KRD LR   EK
Sbjct: 1394 ELTNLKKDQEAN-NSSDTRKKYD-SIIKKRDSLREDLEK 1430


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 521  FFISSKLQSCVGADTHTFFYCLCRQ 447
            F + ++     G+D   F YC CRQ
Sbjct: 1154 FHVGNEYYVIAGSDPSDFHYCFCRQ 1178


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 192 QWAVSVGWQIV*PVHEYEIFKVEKLLVAKAVYAAHSVTQIEPLKPCY 332
           +W +SV  + V P+ EYEIF    L    A   +H    I  +  C+
Sbjct: 368 KWCLSV-IRYVLPLREYEIFYTGHLYALFAFKLSHDEAFISSILACF 413


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +1

Query: 73   ELTGLKPDDDANTNPSKSRASQNLPPDQKRDPLRRSGE 186
            E TGLKP      +PSK     NLP  Q   P +RSG+
Sbjct: 1399 EFTGLKP-----LSPSKI---SNLPSSQPGSPSKRSGK 1428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,728
Number of Sequences: 5004
Number of extensions: 59411
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)