Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4613
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615...    28   6.4  
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    28   8.4  
01_01_0094 - 730484-731570,732030-732715                               28   8.4  

>07_01_0789 -
           6150257-6151046,6151167-6151390,6151816-6151991,
           6152778-6153801
          Length = 737

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 70  GELTGLKPDDDANTNPSKSRASQNLPPDQKRDPL 171
           G+  G + DDDA   P     SQ  PP +   PL
Sbjct: 160 GDAGGRRGDDDAELKPPPPLPSQRPPPSRSPPPL 193


>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 296 VCSVNRLSYQQFLNFEYFVF-MYWLYNLPTHRHSPLSFSPDLLSG 165
           +C  N  + +Q L+F Y  F  YWL++ P    SPL    D  SG
Sbjct: 203 ICYSNFDACRQNLDFCYSSFHTYWLHDHPQFLLSPLYIGGDSYSG 247


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 303 LHCVQRKPP*LPTISQL 253
           LHC+Q KPP  PT+S++
Sbjct: 528 LHCIQVKPPDRPTMSEV 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,445,434
Number of Sequences: 37544
Number of extensions: 399384
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)