Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4609
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.0  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   8.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.0  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.0  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   8.0  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 3   FFFFFLNIDRSLINNKYNVDCKQYYSTNKYL 95
           FFFF ++ D     N  N  C  Y+STN  L
Sbjct: 60  FFFFPVSDDVIPNTNPKNCQCYLYHSTNSQL 90


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 297 THVNYGSYKVRCAICRTIRKETSNA 223
           THVNY + K+  AI   ++KE   A
Sbjct: 370 THVNYVANKIVDAIDEVVKKENKKA 394


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 66  KQYYSTNKYLIFTKISSYN 122
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 297 THVNYGSYKVRCAICRTIRKETSNACYSPLFGKSIIIRL 181
           T V +GS + R  IC  +     + C SP +GK + I++
Sbjct: 181 TCVKFGSKQQRETICAELAGSYVDLCKSP-YGKYLAIKI 218


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 66  KQYYSTNKYLIFTKISSYN 122
           K++YSTN++  F++ + +N
Sbjct: 513 KRFYSTNRHKAFSRFADFN 531


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 129 DISHNSYPLKRQLLETFV 182
           ++SH ++PLKR  L +FV
Sbjct: 18  EVSHLNFPLKRPRLHSFV 35


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 39  INNKYNVDCKQYYSTN 86
           I N  N++CK+ YSTN
Sbjct: 356 IKNISNINCKEAYSTN 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,310
Number of Sequences: 5004
Number of extensions: 34738
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)