Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4609
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKYL 95
           NN YN +CK+ Y    Y+
Sbjct: 102 NNNYNNNCKKLYYNINYI 119


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 21  NIDRSLINNKYNVDCKQYY 77
           N + +  NN YN +CK+ Y
Sbjct: 337 NYNNNNYNNNYNNNCKKLY 355


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 39  INNKYNVDCKQYYSTNKY 92
           I+N Y  DC   YST  +
Sbjct: 183 ISNNYTTDCTIEYSTGNF 200


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 36  LINNKYNVDCKQYYSTNKY 92
           L+ N Y  DC Q YST  +
Sbjct: 214 LVKN-YTADCTQVYSTGNF 231


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 231 KSPFVSSCKLHIVLCNYRNSHASSATKQYYKNKQ 332
           K P  + CK      N   +H S   +Q+ KN+Q
Sbjct: 31  KEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQ 64


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 42  NNKYNVDCKQYYSTNKY 92
           N KYN + K  Y+ N Y
Sbjct: 95  NYKYNYNNKYNYNNNNY 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,731
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)