Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4607
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    30   1.6  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    30   1.6  
U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain (pr...    28   8.4  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 643 VCHSQAF*DSNDWQRGKRR*TPARAHHGKTEANMRSSSLLS 765
           VCH+     SN     KRR +PAR H  ++++ +RS   LS
Sbjct: 791 VCHAVPPTTSNGSMLPKRRNSPARQHRSRSKSAVRSQRSLS 831


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 643 VCHSQAF*DSNDWQRGKRR*TPARAHHGKTEANMRSSSLLS 765
           VCH+     SN     KRR +PAR H  ++++ +RS   LS
Sbjct: 789 VCHAVPPTTSNGSMLPKRRNSPARQHRSRSKSAVRSQRSLS 829


>U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 4 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 284 FTHNDKIHPNNSSDVS*VRHFLESFNGSD 198
           +  + K+HP+NSS+ S    FLE  N  D
Sbjct: 49  YAQSKKVHPDNSSEESATASFLELKNAYD 77


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 453 SRSRGKLTVSNQSAGPVNHQRDTPAP*KLGKSRPRRSR 566
           SRSRG+  +S  S   +  +R+ P P +   SR  +S+
Sbjct: 308 SRSRGRFELSGNSGAEIRIERNLPRPVEQSSSRHGQSQ 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,162
Number of Sequences: 27780
Number of extensions: 338925
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)