Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4604
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    28   1.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   7.4  

>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 446 PSFKIKY-NFIFMILGRLYFYHYL--LLISLKLYVNFYNY 556
           P   IKY +F+F  LGR +FY ++  LL S   + +F  +
Sbjct: 55  PPIAIKYGSFMFSFLGRGFFYAFMGTLLFSYSGFTSFLGF 94


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 312 LLPLLSYTSAIFTANYLVVTSTH*IIMRLNSLLQI 208
           LLPL+SY S     NYL++ ++  II R   + ++
Sbjct: 250 LLPLVSYISDPDFFNYLIIQASGSIIQRRRKIRRL 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,815
Number of Sequences: 5004
Number of extensions: 50468
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)