Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4604
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 210 INHFRGYWIVGPNF 169
           +N   GYW+ GP F
Sbjct: 84  VNDLLGYWVFGPRF 97


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 91  EIFEN*RYGSISSDTASNSRMWEGAFEIRANNPVTSEVVN 210
           EI+ N  + S   + A N +M  G+  +   N + + +VN
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVN 203


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 91  EIFEN*RYGSISSDTASNSRMWEGAFEIRANNPVTSEVVN 210
           EI+ N  + S   + A N +M  G+  +   N + + +VN
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,580
Number of Sequences: 438
Number of extensions: 3583
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)