Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4603
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.2  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   5.5  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   7.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.6  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 62  TVEVIKEAILSAGTLNSPQILLLSGVGPRETL 157
           T+EVIK +  S   LN   I LL G+G  +T+
Sbjct: 683 TLEVIKISRFSNAHLNMQLITLLEGLGVEKTV 714


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 72  TSTVFVSPFFMYSTAVTLLSSGS 4
           TSTVF SP +MY+      S+ S
Sbjct: 223 TSTVFASPTYMYTLYANYASTAS 245


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 248 TKEPDVPVLNWATAMEYMLNRMG 316
           TKE D  + +W  A EYM   +G
Sbjct: 744 TKEKDKEISSWKKASEYMDTNLG 766


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 208 VLSYTWELLYSWYIKFIKSLSW 143
           + SYTW++L  W +   K   W
Sbjct: 537 LFSYTWDILMDWNLLVRKDGRW 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,473
Number of Sequences: 5004
Number of extensions: 39486
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)