Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4603
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 57 1e-08
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 53 1e-07
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 52 2e-07
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 51 5e-07
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 51 7e-07
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 50 2e-06
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 46 3e-05
04_03_0641 + 18261332-18262423 30 1.4
04_03_0354 + 14830325-14830826,14831491-14832416 29 1.8
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 29 2.4
04_04_0539 + 26088245-26088556,26088806-26088931,26089300-260896... 29 2.4
01_03_0182 + 13537522-13539699 28 4.2
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 27 7.4
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 27 7.4
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 7.4
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839 27 9.8
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNH 220
E ILSAG L SPQ+L+LSGVGP + L++F I + + PGVGQ + ++
Sbjct: 268 EIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHPGVGQGMSDN 314
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNL 211
E ILSAG+L SPQ+LLLSG+GP L IP ++P VG+++
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHM 344
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNH 220
E I++AGTL SPQ+L+LSGVGPR L+K I + + P VGQ + ++
Sbjct: 274 EVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADN 320
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNH 220
E ILSAG + SPQ+L+LSGVGP + L F I + P VGQ + ++
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDN 321
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNH 220
E I+SAGTL SPQ+L+LSGVGP+ L+ I I + P VGQ + ++
Sbjct: 279 EVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADN 325
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNH 220
E I+SAG + SPQ+LLLSG+GPR+ L K NI + VG+ + ++
Sbjct: 292 EIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGKGMSDN 338
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNHVGVQLSFRLTKEP 259
E I+SAG + SPQ+LLLSG+GP+ L IP + VG+ + ++ + F TK P
Sbjct: 278 EIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADN-PMNSIFIPTKSP 336
>04_03_0641 + 18261332-18262423
Length = 363
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 190 PRCRTKLTKSCRSSALLQIDKGARCACVEL 279
P +T L +SCR ALL ID+ R +C+E+
Sbjct: 232 PVVKTILVESCRQLALLPIDELHRFSCLEV 261
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 137 VGPRETLDKFNIPTIQELPGVGQNLQNHVGVQLSFRLTKEPDVPVLNWATAM--EYMLNR 310
VGP + N+P + GVG NL G L + + P V T M E++L
Sbjct: 252 VGPLHLTARNNLPADSPVAGVGSNLWKEQGEALRWLDGRPPRSVVYGSITVMSAEHLLEF 311
Query: 311 MGPMSGTGMSQLTGI 355
++G+G + L +
Sbjct: 312 AWGLAGSGYAFLWNV 326
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +2
Query: 128 LSGVGPRETLDKFNIPTIQELPGVGQNLQNHVGVQLSFRLTKEPDVPVLNWATAMEYMLN 307
LS +G L + +I + P + + Q LTKE V +L + +M Y LN
Sbjct: 970 LSSIGGSRALSSMQVVSISDGPKLHEVEQPFT----KGLLTKEEKVELLKFTGSM-YYLN 1024
Query: 308 RMGPMSGTG 334
+ PMSG G
Sbjct: 1025 PLCPMSGNG 1033
>04_04_0539 +
26088245-26088556,26088806-26088931,26089300-26089614,
26090635-26090763,26091172-26091570
Length = 426
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 5 DPLESKVTAVEYIKNGETKTVEVIKEAILSAGTLNS 112
DPL S+V +V Y+K G T++ I GTL S
Sbjct: 246 DPLHSQVLSVTYVKGG--NTIDATPPVIEFGGTLRS 279
>01_03_0182 + 13537522-13539699
Length = 725
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 208 VLSYTWELLYSWYIKFIKSLSWPHSR 131
V Y W +SWY+ F + WP +R
Sbjct: 408 VRKYNWLACFSWYL-FSSRIGWPENR 432
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 27.5 bits (58), Expect = 7.4
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +2
Query: 11 LESKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQ-- 184
L + T I N + + K A+ + G+L +P I L + + T + T +
Sbjct: 82 LRLEPTNARGISNLRYRANRIRKMAVKAGGSLRAPAITLGNHLRNFTTQLRSEARTAEWV 141
Query: 185 --ELPGVGQNLQNHVGVQLSFRLTKEPDVPVLNWATA 289
LP + Q++QN + F T PD +L W A
Sbjct: 142 EARLPRLRQHVQNVAALPADF--TAPPDPDILEWPGA 176
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 174 GILNLSRVSLGPTPDRSNICGEFNVPADSIAS 79
G+ + RV+L P +SN C EF+V + + S
Sbjct: 369 GMSSYKRVALSPLDVQSNACSEFSVTSRKLNS 400
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 59 KTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNHVGVQLS 238
+T +K+ + GT I +L R + K N+P+ E G+ N N V LS
Sbjct: 306 QTSSTLKDLVKKEGTPAKKSICIL-----RNDVKK-NLPSSAEFDGLNHNGINMVKTCLS 359
Query: 239 FRLTKEPDVPVLN 277
K DVP L+
Sbjct: 360 DTQLKSTDVPALS 372
>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
Length = 626
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 153 VSLGPTPDRSNICGEFNVPADSIASFITSTVFV 55
V G T DR G+F+VP S+ +F+T+T+ +
Sbjct: 383 VKQGVTLDRR--IGKFHVPPASLGAFVTATMLI 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,319
Number of Sequences: 37544
Number of extensions: 254118
Number of successful extensions: 618
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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