Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4603
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    83   5e-16
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    83   5e-16

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 83.4 bits (197), Expect = 5e-16
 Identities = 36/79 (45%), Positives = 52/79 (65%)
 Frame = +2

Query: 17  SKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPG 196
           ++   VEY+KNG++      KE ILS G +NSPQ+L+LSG+G  + L K  IP +  LPG
Sbjct: 270 TRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPG 329

Query: 197 VGQNLQNHVGVQLSFRLTK 253
           VGQNLQ+H+ + +    T+
Sbjct: 330 VGQNLQDHLEIYIQQACTR 348


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 83.4 bits (197), Expect = 5e-16
 Identities = 36/79 (45%), Positives = 52/79 (65%)
 Frame = +2

Query: 17  SKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPG 196
           ++   VEY+KNG++      KE ILS G +NSPQ+L+LSG+G  + L K  IP +  LPG
Sbjct: 158 TRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPG 217

Query: 197 VGQNLQNHVGVQLSFRLTK 253
           VGQNLQ+H+ + +    T+
Sbjct: 218 VGQNLQDHLEIYIQQACTR 236


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,084,372
Number of Sequences: 237096
Number of extensions: 1445341
Number of successful extensions: 2489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)