Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4603
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 64 8e-11
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical pr... 27 6.7
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 27 6.7
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 27 8.8
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 27 8.8
AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical... 27 8.8
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 27 8.8
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 27 8.8
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 63.7 bits (148), Expect = 8e-11
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 80 EAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQELPGVGQNLQNHVGVQLSFRLTK 253
+ IL+ G +N+PQ+L+LSGVGP + L IP + LPGVGQNLQ+H+ + + T+
Sbjct: 297 DVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLEIYVQQESTQ 354
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 5 DPLESKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPT 178
+P E+ + ++ N T+E ++ I+SA ++ + LSG + TL ++PT
Sbjct: 20 EPTETIESGDQFDVNEPIPTIETLEPVIISAASVQQLPAISLSGNNAQRTLWIGDVPT 77
>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical
protein T22C1.10b protein.
Length = 1291
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 5 DPLESKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNI 172
DP+ +++TA + +E++ I++ GTL+ + + G D+F+I
Sbjct: 118 DPISNEITASSIFGLSNVRHIELLDSIIIALGTLDG-HVYFFTEQGTMLYFDRFSI 172
>Z75550-8|CAA99926.1| 1307|Caenorhabditis elegans Hypothetical
protein T22C1.10a protein.
Length = 1307
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 5 DPLESKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNI 172
DP+ +++TA + +E++ I++ GTL+ + + G D+F+I
Sbjct: 134 DPISNEITASSIFGLSNVRHIELLDSIIIALGTLDG-HVYFFTEQGTMLYFDRFSI 188
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 73 YKRGNTISRDIELSANITSIWSG 141
YK G+ ++ D+ +S ++ S W G
Sbjct: 288 YKSGDIVNHDVRISQHVVSSWGG 310
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 27.1 bits (57), Expect = 8.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 453 QVLHRLHRWHNSRQRRIVCQDDV 385
Q+LH +HRW +++ ++ +D+
Sbjct: 69 QILHSIHRWSHNQTHKVQYAEDI 91
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 88 YCLFYNFDCFRFTIFYVLNSSDFAFKWIN 2
+ +F+N +T+FY++NS F+ W N
Sbjct: 156 FAVFFNI-ISAWTLFYLINSFSFSIPWSN 183
>AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical
protein Y75B8A.25 protein.
Length = 570
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 132 LEWGQERLLINLIYQLY-KSSQV*DKTYKIM 221
+EW QE+ L+ L + ++ K++ + K YK++
Sbjct: 456 IEWNQEKALVTLFFTVFAKNATIASKGYKMV 486
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 27.1 bits (57), Expect = 8.8
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 453 QVLHRLHRWHNSRQRRIVCQDDV 385
Q+LH +HRW +++ ++ +D+
Sbjct: 69 QILHSIHRWSHNQTHKVQYAEDI 91
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 88 YCLFYNFDCFRFTIFYVLNSSDFAFKWIN 2
+ +F+N +T+FY++NS F+ W N
Sbjct: 156 FAVFFNI-ISAWTLFYLINSFSFSIPWSN 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,031
Number of Sequences: 27780
Number of extensions: 225778
Number of successful extensions: 756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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