Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4603
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   108   4e-26
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  108 bits (259), Expect = 4e-26
 Identities = 50/118 (42%), Positives = 74/118 (62%)
 Frame = +2

Query: 11  LESKVTAVEYIKNGETKTVEVIKEAILSAGTLNSPQILLLSGVGPRETLDKFNIPTIQEL 190
           L  + T V  + NG  + +   +E ILSAG++N+PQ+L+LSG+GP+E L    IP + +L
Sbjct: 293 LNKRATGVNVLINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDL 352

Query: 191 PGVGQNLQNHVGVQLSFRLTKEPDVPVLNWATAMEYMLNRMGPMSGTGMSQLTGIVNS 364
           PGVG+NL NH    + F L  E   P  N     +Y+ N+ GP+S TG++Q+TGI +S
Sbjct: 353 PGVGENLHNHQSFGMDFSL-NEDFYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGIWHS 409



 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 393 PDIQFFFGGYYATCXXXXXXXXXXXXEITDKKEISISAISLHPRSRGYLTL 545
           PDIQ FF GY A C               DK+ + +SA+++ P S+G +TL
Sbjct: 417 PDIQIFFAGYQAIC---KPKLKIADLSAHDKQAVRMSALNVQPTSKGRITL 464


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 183 CIVGILNLSRVSLGPTPDRSNICGEFN 103
           C+VGIL +S  S+       ++C E N
Sbjct: 11  CLVGILAVSEESINKLRKIESVCAEEN 37


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 268 RHIGLLCQSEGELNSDMIL*VLSYTW 191
           R+  + C  +G LNS     ++++TW
Sbjct: 154 RYRTISCPIDGRLNSKQAAVIIAFTW 179


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 268 RHIGLLCQSEGELNSDMIL*VLSYTW 191
           R+  + C  +G LNS     ++++TW
Sbjct: 154 RYRTISCPIDGRLNSKQAAVIIAFTW 179


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 71  VIKEAILSAGTLNSP 115
           +++  IL +GTLN+P
Sbjct: 271 LVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 71  VIKEAILSAGTLNSP 115
           +++  IL +GTLN+P
Sbjct: 271 LVRRGILQSGTLNAP 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,592
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)