Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4599
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 107 PNSSHISYLTEKPKNGEKQ 51
           P+SS  SY+ E P+NG+++
Sbjct: 199 PSSSTKSYVLEGPRNGKRK 217


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 35  MQNINIVSHHS*VSP*DKIYESYLEYNKNVP 127
           M+N+ IV HH+      K YE+ +      P
Sbjct: 354 MKNVTIVDHHTASESFMKHYENEMRLRNGCP 384


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 237 QVPFSTDSTSD*GLTWGDRCHPML*LEGL 323
           QVP  T S        GD C P L  +G+
Sbjct: 33  QVPQQTQSVQQQSQQAGDPCDPSLLRQGV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,954
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)