Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4598
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 265 KSNTHRKDLRYMLYCCLCRERQHSLLPFSV*QRSQLTKYYYYDCRFE 125
           ++  +R+++   +Y CL R    S+    V  R+ + +YY  D   E
Sbjct: 66  RAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKE 112


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 661 FFVSTSNTNLQFKSIYSLLPTIQ*PRSDSPQTTLFYSLRKKKLVTSQLN 515
           F V     ++ F   YSL+PT     +  P TT   ++ +K +    +N
Sbjct: 361 FDVKPEFGSIYFLGNYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVVN 409


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 90  YSRHLKKNSNQSQLCA 43
           Y ++ K+NS +S +CA
Sbjct: 179 YPQNSKRNSEESAICA 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,494
Number of Sequences: 438
Number of extensions: 3630
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)