Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4597
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 286 2e-78
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 168 6e-43
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 167 1e-42
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 158 8e-40
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 128 1e-30
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 128 1e-30
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 123 2e-29
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 122 5e-29
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 120 1e-28
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 116 3e-27
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 114 1e-26
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 113 3e-26
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 111 9e-26
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 109 3e-25
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 109 5e-25
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 103 3e-23
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 99 3e-22
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 98 9e-22
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 94 1e-20
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 73 3e-14
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 35 0.013
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 33 0.029
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 33 0.029
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 33 0.029
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 33 0.029
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 33 0.039
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.16
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.36
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 30 0.36
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.36
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 1.9
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 2.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.5
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.9
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 5.9
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 5.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 5.9
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 7.8
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 7.8
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 286 bits (701), Expect = 2e-78
Identities = 136/195 (69%), Positives = 162/195 (83%)
Frame = +3
Query: 3 KMDLIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGV 182
KMD+IDL++D+IDAEVL+SL V+MDNFR+A+ S+PSALRETVVEVPNV W DIGGLE V
Sbjct: 446 KMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVVEVPNVRWEDIGGLEEV 505
Query: 183 KRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362
KREL+E VQ PV + +KFL+FG+ PS+GVLF+GPPG GKTLLAKAIANEC ANFISVKGP
Sbjct: 506 KRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGP 565
Query: 363 ELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXXXXXXXXXXXXXXVINXIL 542
ELL+MWFGESE+NVRDIFDKAR+A+PCV+F DELDSIAK V+N +L
Sbjct: 566 ELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAK-ARGASAGDSGGGDRVVNQLL 624
Query: 543 TXMDXMGAKKNVFII 587
T MD + +KKNVF+I
Sbjct: 625 TEMDGVNSKKNVFVI 639
Score = 131 bits (316), Expect = 1e-31
Identities = 62/147 (42%), Positives = 91/147 (61%)
Frame = +3
Query: 147 VTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 326
V + DIGG +++ELV+ P+ HP F G++P RG+L YGPPG GKTL+A+A+AN
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280
Query: 327 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXXXXXXXX 506
E A F + GPE+++ GESE+N+R F++A SP ++F DE+DSIA
Sbjct: 281 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIA---PKREKTN 337
Query: 507 XXXXXXVINXILTXMDXMGAKKNVFII 587
V++ +LT MD M A+ NV ++
Sbjct: 338 GEVERRVVSQLLTLMDGMKARSNVVVM 364
Score = 65.7 bits (153), Expect = 6e-12
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
GATNRPD IDPA++RPGRLDQLIY+PLPDE++R
Sbjct: 640 GATNRPDQIDPALMRPGRLDQLIYVPLPDEEAR 672
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNRP+ IDPA+ R GR D+ + + +PD R
Sbjct: 366 ATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 779
Score = 168 bits (409), Expect = 6e-43
Identities = 80/191 (41%), Positives = 118/191 (61%)
Frame = +3
Query: 15 IDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKREL 194
++ D + E L LA+ +F A+ K PS+ RE VP V+W +IG L+ ++ EL
Sbjct: 445 LNAHPDPLSPEELEPLAICPQDFIEALAKVQPSSKREGFATVPGVSWNNIGALKSIRVEL 504
Query: 195 QELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 374
Q + P++ P+ + G+ GVL +GPPGCGKTLLAKA+ANE +ANFIS++GPELL
Sbjct: 505 QMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLN 564
Query: 375 MWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXXXXXXXXXXXXXXVINXILTXMD 554
+ GESE VR +F +AR++SPCV+FFDELD++ V+N +LT +D
Sbjct: 565 KYVGESERAVRQVFLRARASSPCVIFFDELDAMV---PRRDDSLSEASSRVVNTLLTELD 621
Query: 555 XMGAKKNVFII 587
+ + V++I
Sbjct: 622 GLSDRSGVYVI 632
Score = 128 bits (309), Expect = 7e-31
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Frame = +3
Query: 15 IDLEDDQ--IDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPN-VTWTDIGGLEGVK 185
ID ED++ + E + A D R + T S E E P+ ++ +DIGGL+
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKD--RRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCI 183
Query: 186 RELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 365
EL ELV P++HP+ + G+ P RGVL +GPPGCGKT+LA A+ANE FIS+ P
Sbjct: 184 NELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPS 243
Query: 366 LLTMWFGESEANVRDIFDKARSASPCVLFFDELDSI 473
+++ GESE VR++F++A+S +PC++F DE+D++
Sbjct: 244 IVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAV 279
Score = 52.0 bits (119), Expect = 8e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNRPDIIDPA+LRPGRLD+ + + LPD R
Sbjct: 634 ATNRPDIIDPAMLRPGRLDKTLLVDLPDAHER 665
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRE 690
GATNRPD +D A+ R GR D+ I + +P + +RE
Sbjct: 319 GATNRPDSLDSALRRAGRFDREICLTVPSQDARE 352
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 167 bits (406), Expect = 1e-42
Identities = 83/191 (43%), Positives = 120/191 (62%)
Frame = +3
Query: 15 IDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKREL 194
I L+ D ++ AV MD+ +A++ SA+RE ++E PNV W+DIGG E VK++L
Sbjct: 503 ISLQKDTSGLDIFG--AVQMDDLEFALSSVRQSAMREFMMESPNVHWSDIGGQEEVKQKL 560
Query: 195 QELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 374
+E V++P+ H + F + G++P +GVL YGPPGC KT+ AKAIA E NFI+VKGPEL
Sbjct: 561 KESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFD 620
Query: 375 MWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXXXXXXXXXXXXXXVINXILTXMD 554
+ GESE VR +F KAR ASP V+FFDE+D++ V+ +L +D
Sbjct: 621 KFVGESERAVRQVFQKARQASPSVIFFDEIDALT-----ANRGEDNSSDRVVAALLNELD 675
Query: 555 XMGAKKNVFII 587
+ A +NV ++
Sbjct: 676 GIEALRNVLVL 686
Score = 109 bits (261), Expect = 5e-25
Identities = 44/110 (40%), Positives = 76/110 (69%)
Frame = +3
Query: 147 VTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 326
VT++ IGGL+ +++++V+ P ++P+ F F + P RGVL YGPPG GKT++ +A+A
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 327 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIA 476
E A ++ GP ++ + GE+E+ +R IF+ AR+ P ++F DE+D++A
Sbjct: 336 EANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALA 385
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/33 (60%), Positives = 30/33 (90%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRE 690
ATNRPD+IDPA++RPGRLD+L+Y+ P+ ++R+
Sbjct: 688 ATNRPDMIDPALMRPGRLDRLLYVGPPNFEARK 720
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNRP+ ID A+ RPGRL++ I I +PD+ +R
Sbjct: 421 ATNRPNSIDEALRRPGRLEKEIEIGIPDKSAR 452
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 158 bits (383), Expect = 8e-40
Identities = 75/153 (49%), Positives = 102/153 (66%)
Frame = +3
Query: 126 TVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTL 305
T+ VP V W DIGGLE K L++ +Q P++ P+ F + G++P GVL YGPPG GKTL
Sbjct: 645 TIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTL 703
Query: 306 LAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXX 485
LAKA+A E F+S+KGPELL M+ GESEANVR++F+KAR++SPCV+FFDELDSIA
Sbjct: 704 LAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIA-PH 762
Query: 486 XXXXXXXXXXXXXVINXILTXMDXMGAKKNVFI 584
V++ +L +D + N ++
Sbjct: 763 RGNSSDSGNVMDRVVSQLLAELDSISKDNNKYV 795
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRE 690
GATNRPD++DP++LRPGR D+L+Y+ + KS E
Sbjct: 799 GATNRPDLLDPSLLRPGRFDKLVYLGI--NKSEE 830
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 128 bits (308), Expect = 1e-30
Identities = 66/162 (40%), Positives = 93/162 (57%)
Frame = +3
Query: 102 SSPSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYG 281
SS S LR E P+V++ D+GGL+ K+E++E V+ P+ D + + G+ P RGVL YG
Sbjct: 118 SSISMLRPD--ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYG 175
Query: 282 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDE 461
PPG GKT+L KA+AN ANFI V G E + + GE VRD+F AR +P ++F DE
Sbjct: 176 PPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDE 235
Query: 462 LDSIAKXXXXXXXXXXXXXXXVINXILTXMDXMGAKKNVFII 587
+D+IA ++ +LT MD NV +I
Sbjct: 236 IDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVI 277
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIP 666
ATNR D +DPA+LRPGRLD+ I P
Sbjct: 279 ATNRADTLDPALLRPGRLDRKIEFP 303
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 128 bits (308), Expect = 1e-30
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Frame = +3
Query: 12 LIDLEDDQIDAEVLNSLAVSMDNFRYAMT-----KSSPSALRETVVEVPNVTWTDIGGLE 176
++ L + ++ + V D +YA+ K PS V E P+VT+ D+GG +
Sbjct: 126 VVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCK 185
Query: 177 GVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 356
L+E+V+ P+ P++F+K G+ P +G++ YGPPG GKTL A+A+AN A FI V
Sbjct: 186 EQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVI 245
Query: 357 GPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXXXXXXXXXXXXXXVINX 536
G EL+ + GE VR++F+ AR+ C++FFDE+D+I +
Sbjct: 246 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 305
Query: 537 ILTXMDXMGAKKNVFII 587
++T +D + N+ ++
Sbjct: 306 LITQLDGFDPRGNIKVL 322
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNRP+ +D A++RPGR+D+ + LPD + R
Sbjct: 324 ATNRPNTLDEALMRPGRIDRKVEFGLPDLEGR 355
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 123 bits (297), Expect = 2e-29
Identities = 61/160 (38%), Positives = 93/160 (58%)
Frame = +3
Query: 108 PSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPP 287
P LR+ ++ W DI G++ K ++++++ PV++ + + ++ G+L +G P
Sbjct: 590 PLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYP 649
Query: 288 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELD 467
GCGKT LA AI++ FIS+KGPELL + G+SE VRD+F +A+ A PCVLFFDE D
Sbjct: 650 GCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFD 709
Query: 468 SIAKXXXXXXXXXXXXXXXVINXILTXMDXMGAKKNVFII 587
S+A V+N ILT MD + V+I+
Sbjct: 710 SVA---PRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIV 746
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
AT RPD+IDPA+LRPGRLD+LI+ LP+E+ R
Sbjct: 748 ATTRPDMIDPALLRPGRLDKLIFCDLPNEEER 779
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = +3
Query: 117 LRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCG 296
++ + ++ + T++ G++ L P H ++ + + + GP GCG
Sbjct: 325 VKNPIQDIKITSDTNVPVNAGIRNNSPRLSMQPFPHEFAQVRNAVFLHQNIYINGPKGCG 384
Query: 297 KTLLAKAIANECQANFI----SVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDEL 464
K+ L ++ + N I V E+ F + ++ ++F +A P +++ D++
Sbjct: 385 KSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFAKFQSFWNNVFIQAERYEPSIIYLDDV 444
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 122 bits (294), Expect = 5e-29
Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Frame = +3
Query: 12 LIDLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETV----VE-VPNVTWTDIGGLE 176
++D+ D E+ ++ V++ N Y + K P+ + V VE +P+ T+ +GGLE
Sbjct: 92 VVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLE 151
Query: 177 GVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 356
+E++E+++ PV+HP+ F G+ +G+L YGPPG GKTLLA+A+A+ FI V
Sbjct: 152 KQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVS 211
Query: 357 GPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSI-AKXXXXXXXXXXXXXXXVIN 533
G EL+ + GE VR++F AR +P ++F DE+DSI + +
Sbjct: 212 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTML 271
Query: 534 XILTXMDXMGAKKNVFII 587
+L +D A KN+ +I
Sbjct: 272 ELLNQLDGFEATKNIKVI 289
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNR DI+DPA+LRPGR+D+ I P P ++R
Sbjct: 291 ATNRIDILDPALLRPGRIDRKIEFPPPSAEAR 322
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 120 bits (290), Expect = 1e-28
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Frame = +3
Query: 99 KSSPSALRETV-VEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLF 275
K SAL + VE PNV W DI GLE K L+E V P++ P F G +P G+L
Sbjct: 109 KKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLF-SHGRKPWSGILL 167
Query: 276 YGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFF 455
YGPPG GK+ LAKA+A E + F S+ +L++ W GESE VR +F+ AR P ++F
Sbjct: 168 YGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFI 227
Query: 456 DELDSI 473
DE+DS+
Sbjct: 228 DEIDSL 233
Score = 31.9 bits (69), Expect = 0.090
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
GATN P +D AI R R ++ IYIPLP+ +R
Sbjct: 270 GATNIPWTLDSAIRR--RFEKRIYIPLPNAHAR 300
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 116 bits (279), Expect = 3e-27
Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 5/153 (3%)
Frame = +3
Query: 144 NVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 323
++++ +GGL+ +L+E+V P+ +P+ F +F MQP RGVLF+GPPG GKTL+A+A+A
Sbjct: 262 SLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
Query: 324 NEC-----QANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXX 488
C + +F KG + L+ W GE+E +R +F++A+S P ++FFDE+D +A
Sbjct: 322 AACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLA---P 378
Query: 489 XXXXXXXXXXXXVINXILTXMDXMGAKKNVFII 587
+++ +L MD M ++ V II
Sbjct: 379 VRSSKQEQIHASIVSTLLALMDGMESRGQVIII 411
Score = 53.2 bits (122), Expect = 3e-08
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRE 690
GATNRPD +DPA+ RPGR D+ Y PLPD +R+
Sbjct: 412 GATNRPDAVDPALRRPGRFDREFYFPLPDRDARK 445
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 114 bits (274), Expect = 1e-26
Identities = 49/113 (43%), Positives = 76/113 (67%)
Frame = +3
Query: 135 EVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAK 314
+ P ++ DIGGLE +E++E V+ P+ HP+ + + G++P +GV+ YG PG GKTLLAK
Sbjct: 184 KAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 243
Query: 315 AIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSI 473
A+AN+ A F+ V G EL+ + G+ VR +F+ A SP ++F DE+D+I
Sbjct: 244 AVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAI 296
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNR +DPA++RPGR+D+ I PDE ++
Sbjct: 337 ATNRISDLDPALIRPGRIDRKILFENPDEATK 368
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 113 bits (271), Expect = 3e-26
Identities = 56/121 (46%), Positives = 75/121 (61%)
Frame = +3
Query: 111 SALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPG 290
S LRE VV V W DI GLE K L+E V YP PD F +P+RG+L +GPPG
Sbjct: 444 SILREIVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGL-REPARGMLLFGPPG 502
Query: 291 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDS 470
GKT+LA+A+A E ++ F S+ L + + GESE VR +F A+ SP ++F DE+DS
Sbjct: 503 TGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDS 562
Query: 471 I 473
+
Sbjct: 563 L 563
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATN P ID A R R + YIPLPDE +R
Sbjct: 611 ATNLPWCIDDAARR--RFVRRTYIPLPDETTR 640
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 111 bits (267), Expect = 9e-26
Identities = 47/122 (38%), Positives = 80/122 (65%)
Frame = +3
Query: 108 PSALRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPP 287
P ++ + ++++ +GGL REL+E+++ P+++P+ FL+ G++P +GVL YGPP
Sbjct: 116 PLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPP 175
Query: 288 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELD 467
G GKTLLA+A+A NF+ V ++ + GES +R++F A+ PCV+F DE+D
Sbjct: 176 GTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEID 235
Query: 468 SI 473
+I
Sbjct: 236 AI 237
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNRPD +DPA+LRPGRLD+ I IPLP+E R
Sbjct: 277 ATNRPDTLDPALLRPGRLDRKIEIPLPNEVGR 308
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 109 bits (263), Expect = 3e-25
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Frame = +3
Query: 144 NVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 323
N+ + IGGLE + +L+E+V P+ +P+ FL + P RGVLF+GPPG GKTL+A+ +A
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
Query: 324 NEC-----QANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAKXXX 488
C + +F KG + L+ W GE+E +R +F++AR P ++FFDE+D +A
Sbjct: 428 ANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLA---P 484
Query: 489 XXXXXXXXXXXXVINXILTXMDXMGAKKNVFII 587
+++ +L MD + + V +I
Sbjct: 485 IRSSKQEQTHSSIVSTLLALMDGLDTRGQVVVI 517
Score = 48.8 bits (111), Expect = 7e-07
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
GATNRP+ +DPA+ RPGR D+ Y PLP++++R
Sbjct: 518 GATNRPNDLDPALRRPGRFDREFYFPLPNKQAR 550
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 109 bits (261), Expect = 5e-25
Identities = 51/115 (44%), Positives = 72/115 (62%)
Frame = +3
Query: 129 VVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLL 308
V E P ++DIGGL EL E + P++ DKF K G++P +G L +GPPG GKTLL
Sbjct: 176 VDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
Query: 309 AKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSI 473
A+A A + A F+ + P+L+ M+ G+ VRD F A+ SP ++F DELD+I
Sbjct: 236 ARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAI 290
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 592 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
ATNR D +DPA+LR GRLD+ + PLP+E++R
Sbjct: 330 ATNRVDTLDPALLRSGRLDRKLEFPLPNEEAR 361
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 103 bits (246), Expect = 3e-23
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +3
Query: 147 VTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 326
+ + D+ G++ K E+ E V++ +++P + + G + RG + GPPG GKTLLAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 327 ECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAK-XXXXXXXX 503
E F+SV G E L M+ G + VRD+F AR +PC++F DE+D+I K
Sbjct: 352 EANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFG 411
Query: 504 XXXXXXXVINXILTXMDXMGAKKNVFI 584
+N +L MD + +++ +
Sbjct: 412 SNDERESTLNQLLVEMDGFTSSEHIVV 438
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 586 FGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRE 690
F TNRPD++DPA+LRPGR D+ I I PD RE
Sbjct: 439 FAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGRE 473
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 99 bits (238), Expect = 3e-22
Identities = 48/119 (40%), Positives = 72/119 (60%)
Frame = +3
Query: 117 LRETVVEVPNVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCG 296
+ E + V W+DI GL+ K L+E V YP P+ F +P +G+L +GPPG G
Sbjct: 366 MNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGL-REPVQGMLLFGPPGTG 424
Query: 297 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSI 473
KT+LA+A+A E +A F S+ L + + G+SE VR +F+ A+ + V+F DE+DSI
Sbjct: 425 KTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSI 483
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 98.3 bits (234), Expect = 9e-22
Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Frame = +3
Query: 144 NVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFG--MQPSRGVLFYGPPGCGKTLLAKA 317
+V++ DIGG++ +L + V +P+++P+ F G + +G+L YGPPGCGKT+LAKA
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKA 144
Query: 318 IANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAK 479
+A + QA FI+V L WFGES V +F AR P ++F DE+D+ +
Sbjct: 145 LAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLR 198
Score = 31.9 bits (69), Expect = 0.090
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
GATNRP ID AI R R+ ++ IPLP+ + R
Sbjct: 233 GATNRPADIDEAIRR--RMPKVFSIPLPNAEQR 263
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 94.3 bits (224), Expect = 1e-20
Identities = 44/112 (39%), Positives = 68/112 (60%)
Frame = +3
Query: 144 NVTWTDIGGLEGVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 323
NV ++D+ G++ K EL+E+V + + P F + G + RGVL GPPG GKT+LA+A+A
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVA 321
Query: 324 NECQANFISVKGPELLTMWFGESEANVRDIFDKARSASPCVLFFDELDSIAK 479
E F + G + M+ G VR++F AR +P ++F DELD+I +
Sbjct: 322 GEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQ 373
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
GATN P+ +DPA+ RPGR D+ I++PLPD + R
Sbjct: 411 GATNFPESLDPALTRPGRFDRHIHVPLPDVRGR 443
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 73.3 bits (172), Expect = 3e-14
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Frame = +3
Query: 225 PDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELLTMWFGESEAN 401
P K G+ +G+L YGPPG GKTL+A+ I A V GPE+L + G+SE N
Sbjct: 293 PGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEEN 352
Query: 402 VRDIF--------DKARSASPCVLFFDELDSIAKXXXXXXXXXXXXXXXVINXILTXMDX 557
VR +F D+ + ++ FDELD+I K V+N +L MD
Sbjct: 353 VRKLFADAEREYRDRGEESGLHIIIFDELDAICK-KRGSSGGDTGVGDQVVNQLLAKMDG 411
Query: 558 MGAKKNVFII 587
+ N+ +I
Sbjct: 412 VDQLNNILVI 421
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 589 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 687
G TNR D+ID A+LRPGRL+ + I LPDE R
Sbjct: 422 GMTNRKDMIDEALLRPGRLEVHMEISLPDEHGR 454
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 586 FGATNRPDIIDPAILRPGRLDQLIYI 663
F TN P+ +DPA++RPGR+D Y+
Sbjct: 343 FMTTNHPEKLDPALVRPGRVDVKAYL 368
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 246 GMQPSRGVLFYGPPGCGKTLLAKAIANE 329
G+ RG L YGPPG GKT A+A E
Sbjct: 238 GIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.5 bits (73), Expect = 0.029
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 231 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEA 398
K KFG +GVLF G G GKT LA AIA E + F + G E+ + ++EA
Sbjct: 58 KSKKFG---GKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEA 112
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 252 QPSRGVLFYGPPGCGKTLLAKAIAN 326
QP LF GP G GKTLL KA+A+
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALAS 636
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Frame = +3
Query: 279 GPPGCGKTLLAKAIA-----NECQANFISVK------GPELLTMWF-GESEANVRDIFDK 422
G PG GKT +A+ +A ++ AN + K G + F GE E ++ + +
Sbjct: 209 GEPGVGKTSIAEGLARRIIDDDVPANLSNCKLLSLDVGSLVAGSKFRGEFEERIKSVLKE 268
Query: 423 A-RSASPCVLFFDEL 464
S +P +LF DE+
Sbjct: 269 VEESETPIILFVDEM 283
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 33.5 bits (73), Expect = 0.029
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 DIGGLEGVKRELQELVQ-YPVEHPDKFLK---FGMQPSRGVLFYGPPGCGKTLLAKAIA 323
DI G +GV ++LQ+ +Q Y F K G+ + VL GPPG GKT A +A
Sbjct: 372 DICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 231 KFLKFGMQPSRGVLFYGPPGCGKTLL 308
+FL F + +R V+F GPPG GK++L
Sbjct: 2504 EFLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 33.1 bits (72), Expect = 0.039
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 231 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEA 398
K ++ G R +L GPP GKT +A +A ++ F+++ E+ ++ ++EA
Sbjct: 56 KMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEA 113
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +3
Query: 246 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISVKG----PEL---LTMWFGESEA 398
G + + GPPG GKT + K+IA+ F SV G E+ + G
Sbjct: 567 GTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFRFSVGGLTDVAEIKGHRRTYIGAMPG 626
Query: 399 NVRDIFDKARSASPCVLFFDELDSIAK 479
+ K ++ +P +L DE+D + K
Sbjct: 627 KIVQALKKVQTENPLIL-IDEIDKVGK 652
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.9 bits (64), Expect = 0.36
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = +3
Query: 78 NFRYAMTKSSPSALRETVVEVPN--VTWTDIGG-LEGVKRELQEL-VQYPVEHPDKF--L 239
N + K S L E +++ + + D GG + + Q++ YP P F L
Sbjct: 555 NKKLEKDKQSGKVLDEEIIQEKQLVIRFEDCGGGIPSPAIKFQDVSFNYP-GGPTIFSKL 613
Query: 240 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 353
FG+ V GP G GKT L K I + Q + SV
Sbjct: 614 NFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 252 QPSRGVLFYGPPGCGKTLLAKAIA 323
+P LF GP G GKT L KA+A
Sbjct: 530 RPLASFLFLGPTGVGKTALTKALA 553
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 228 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 329
+KF+ P +LFYGPPG GKT A A +
Sbjct: 48 EKFISSNRVPH--MLFYGPPGTGKTSTILACARK 79
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 18 DLEDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIGGLEGVKRELQ 197
DL DD++ ++S ++ A T + S +E + E+P++ ++D EL
Sbjct: 84 DLPDDELSRSNVSSPEKTL--LTSASTSTFDSLKKELLPELPSLAYSDDDEFPSSPEELN 141
Query: 198 ELVQYPVEHPDKFLKFGMQP 257
V YP G+QP
Sbjct: 142 SHVNYPDVRNVYDCHTGLQP 161
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 258 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 362
SR +L GP GCGK+ + +A E + I P
Sbjct: 105 SRLLLICGPSGCGKSTAVQVLAKELGYSLIEWLNP 139
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -1
Query: 526 TRSAAPPASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDSPNHMVSSSGPFTD 347
T ++ +S + + SSSS +++ + + S S + +S S + SSS P T
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
Query: 346 IKLA*HSLAMAFAS 305
+ HS + + +S
Sbjct: 213 STSSSHSSSSSSSS 226
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 520 SAAPPASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDSPNHMVSSS 362
S++P +S T + SSSS +++ + + S S + +S S + SSS
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 193
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -1
Query: 553 SXSVRXWLMTRSAAPPASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDSPNHM 374
S SV + S++ P+S + SSSS +++ + + S S + +S S +
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Query: 373 VSSS 362
SSS
Sbjct: 189 SSSS 192
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -1
Query: 520 SAAPPASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDSPNHMVSSSGPFTDIK 341
S PAS PP ++ SS N + ++ R K +R D V G F +
Sbjct: 621 STPTPASVLAPPSSASLSSSKDANRSVPESPRR-EKKNRVTLDDFTFLAVLGKGNFGKVM 679
Query: 340 LA*HSLAMAF-ASKVL 296
LA + + F A KVL
Sbjct: 680 LAEYKVNKKFYAIKVL 695
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 267 VLFYGPPGCGKTLLAKAIANE 329
+LFYG PG GKT A++ E
Sbjct: 55 MLFYGSPGTGKTSTILALSRE 75
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 249 MQPSRGVLFYGPPGCGKTLLAKAIANE 329
+Q + +L G PG GKT L A+A E
Sbjct: 1556 LQVLKPILLEGSPGVGKTSLITALARE 1582
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +3
Query: 165 GGLEGVKRELQELV-------QYPVEHPDKF--LKFGMQPSRGVLFYGPPGCGKTLLAKA 317
G LEGVK + + ++ QYP + + F + S + GP G GK+ L K
Sbjct: 660 GFLEGVKTKQRAIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKV 719
Query: 318 IANE 329
+ E
Sbjct: 720 LTGE 723
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 252 QPSRGV-LFYGPPGCGKTLLAKAIANECQANFI 347
QP + V + GP G GKT +AKA++ + +I
Sbjct: 11 QPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYI 43
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 231 KFLKFGMQPSRGVLFYGPPGCGKT 302
K +KF + L +GPPG GKT
Sbjct: 216 KAVKFSIAVKELSLIHGPPGTGKT 239
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 261 RGVLFYGPPGCGKTLL 308
+G+ YG GCGKT L
Sbjct: 119 KGIYLYGDVGCGKTAL 134
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 520 SAAPPASDTEPPRDLAMESSSSKNNT--HGDADRALSKMSRTFASDSPNHMVSSS 362
S P D P L SSSS +NT G + +LS S + SD+ + + S S
Sbjct: 19 SPTAPPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPS 73
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -1
Query: 517 AAPPASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDSPNH 377
AAP +S + + S + A + S SRT A P+H
Sbjct: 269 AAPSSSTESDEESIPLSYQSKRRRVSARASSSASSSSRTQAKSIPSH 315
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 363 LVPSLI*S*PDTRWRWPL 310
++ SL+ DT WRWPL
Sbjct: 199 IISSLVTEHSDTAWRWPL 216
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 267 VLFYGPPGCGKTLLAKAIANECQANFIS-VKGP 362
V GPPG GK+ L K++ IS + GP
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQITGP 109
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = -1
Query: 592 HRMMKTFFLAPMX-SXSVRXWLMTRSAAPPASDTEPPRDLAMESSSSKNNTHGDADRALS 416
+RM K ++P S S R ++ + T R ES S +++ D+D S
Sbjct: 48 YRMPKDESISPTPISYSFRSLRRGHTSGHASEHTSSSRSSHDESDSMSSSSESDSDSVSS 107
Query: 415 KMSRTFASDSPNHMVSSSGPFTDIKL 338
+ + SDS SS I L
Sbjct: 108 ESNPKSYSDSSTSSARSSSTSGSISL 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,869
Number of Sequences: 5004
Number of extensions: 48551
Number of successful extensions: 346
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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