Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4597
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 24  EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 167
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 223 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 266


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 24  EDDQIDAEVLNSLAVSMDNFRYAMTKSSPSALRETVVEVPNVTWTDIG 167
           +DD ID + +NSL +S   +   +T      ++E+ VEV  ++W   G
Sbjct: 261 DDDSIDFDRMNSLGLS---WLDQLTNLGFLGMKES-VEVDQLSWLGSG 304


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 165 RCRSTSRWELPPLSHVTPTETISSLRTGSYPW 70
           R ++T +    P +H    ++    R+GS+ W
Sbjct: 676 RIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSW 707


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 609 HHRPGHPASRPSGPAHLHPAAGRKVPR 689
           H R  +  S  SG   LH A+  K P+
Sbjct: 538 HRRRANSGSTSSGDDELHRASLSKTPQ 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,450
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)