Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4593
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    31   0.16 
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    29   0.50 
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    29   0.66 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   6.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.1  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.1  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 367 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLQTI 471
           RY LEQ L+  P+EH +  TE  + PP+  R++T+
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 357 NEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDTNFSNE 488
           N+  +S  ++P+S PH     K    R+PS+DP  P  + F+N+
Sbjct: 153 NDTGLSLLSLPKSVPHSPAMHK----RTPSSDPNNPFGSTFANK 192


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 672 KPKTHYCFTAEIGRVVVPTRADSQEVYHQ*LHKL 571
           KP     FT  + +V VPT    +E YH+ LH++
Sbjct: 376 KPSLVCDFTDGVSQVFVPTPPSIEEAYHKLLHRV 409


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 583 ITQIIILRVSFLLHDVIPSPWKSIVNI 503
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 243 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 353
           I  +Y A  + G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 272 LWKRTVDDRSGSR*YG*TLLRWRAVRW 352
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 390 QSTPHGTYGTKYRGNRSPSADPEAPNDTNFS 482
           +S+ +   G  YR NRS + D +  +D +FS
Sbjct: 257 RSSSYSRRGDSYRSNRSRAHDDDDEDDYSFS 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,049
Number of Sequences: 5004
Number of extensions: 74411
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)