Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4593
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    30   2.1  
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    29   3.6  
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835...    29   3.6  
08_02_1461 - 27299891-27301870                                         28   8.4  
04_04_1594 + 34675012-34675101,34675228-34675433,34675950-34676121     28   8.4  
04_03_0095 + 11114971-11115939,11115954-11116556                       28   8.4  

>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 191 KKDMS*RSGNTMEGSSFHSRMVRGKK-DLWKRTVDDRSGSR*YG*TLLRWRAVRW*KRDA 367
           K+ +  R GN M GS  +    R K+  +    +         G   LR + ++      
Sbjct: 106 KRSVRDRLGNNMVGSESYDGQQRNKRRQIETNGLQHGDNDCQVGRDDLRLKLMK-----K 160

Query: 368 GIISNNSSEHSPWNIRYKIQREPKSLRR 451
           G+ SN  +E +  ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188


>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 351 GKNEMPVSSRTIPQSTPHGTYG-TKYRGNRSPSADPEAPNDTNFSNEIR 494
           G+ E  V  +T  Q+ PH  YG T  R  R+ +  P A N+    + IR
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIR 149


>01_01_1059 -
           8356328-8356645,8357567-8357865,8358119-8358124,
           8358276-8358720,8359722-8360036
          Length = 460

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 303 APGSMDELYSGGGRCDGKN--EMPVSSRTIPQSTPHGTYGTKYRGNRSPS-ADPEAPNDT 473
           AP S  + Y      DG++  +MP  S+  PQ+     YG K R  +S S   P   +D+
Sbjct: 222 APRSQSKGYYNERPLDGRSHDDMPKFSKESPQARASANYGAKGRPAQSKSPCQPSYIDDS 281

Query: 474 NFSNE 488
             SN+
Sbjct: 282 LRSND 286


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 655 LLHGRNRQGGGTHPRGL 605
           LL GR R GGG H RGL
Sbjct: 290 LLRGRRRGGGGGHRRGL 306


>04_04_1594 + 34675012-34675101,34675228-34675433,34675950-34676121
          Length = 155

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 566 FAGFIFITRCYSFTVEVNREHLLSTYFIRKIGIVW-SLWVCGGTSVPSVFCTVCSMGSAL 390
           FAGF FIT C +  +  +R    S   + ++ IVW S       ++P   C     GSAL
Sbjct: 90  FAGFCFITCCSTSGLFCDRSSPSSAPILNEVKIVWLSDEAEAAPNIPRDRCHWKEDGSAL 149


>04_03_0095 + 11114971-11115939,11115954-11116556
          Length = 523

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 162 RLILSTSLV*RRTCHSA--RETPW--REAHSIAGWYVAK 266
           RL+L  +LV  R C     ++  W  ++ H I GW+V+K
Sbjct: 478 RLLLGNALVLERVCVKLVKQKLAWQLKQKHDIEGWFVSK 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,305,244
Number of Sequences: 37544
Number of extensions: 569445
Number of successful extensions: 1565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)