Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4593
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-11|AAB42238.2|  308|Caenorhabditis elegans C-type lectin ...    29   3.3  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    28   7.6  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    28   7.6  
AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U88169-11|AAB42238.2|  308|Caenorhabditis elegans C-type lectin
           protein 53 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 290 PQCVSRDLFCHVPSGYG-MSFPPWCFPSAMTCPSSNEACGEY*AVGSDLGSALGIAE 123
           P C +  +  H PSGY       +C+ + +   + N+A     A G DL S   IAE
Sbjct: 155 PTCPTITIPSHCPSGYTWFETTDFCYKTTVQFTNFNDARSACQADGGDLASIHSIAE 211


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -3

Query: 365 HLVFTIAPPATGVEFIHTTWSHCGHPQCVSRDLFCHVPSGYGMSFPPWCFPSAMTCPSSN 186
           H +  +  PA   +       HC   QCV+R  + H    Y     P C P  M  PS +
Sbjct: 264 HPLVLVVHPAPQAQCSPACQPHCSQ-QCVARLQYMHESQFYNHILEPSCRPDCM--PSCH 320

Query: 185 EAC 177
             C
Sbjct: 321 VDC 323


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 542 RCYSFTVEVNREHLLSTYFIRKIGIVWSLWVCG 444
           RC  + V +   +LL+TY  RKI + W+L + G
Sbjct: 478 RCPPYLVGLLTGYLLATYGSRKIRLNWALAIAG 510


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
 Frame = +3

Query: 204 HSARETPWREAHSIA-GWYVAKKISGNALWMTAVAPGSMDELYSGGGRCDGKNEMPVSSR 380
           H+   T W +   +  GW      +    ++  +   +  E   G G      + PV   
Sbjct: 319 HNTGTTTWDDPRELPPGWEQVDDQNYGTFYVDHINRKTQYERPYGFGGSSATIDQPVKYG 378

Query: 381 TIPQSTPHGTYGTKYRGNRSPSADPEAPNDTNFSN 485
           T+P ST H         N        +P D+ F +
Sbjct: 379 TLPSSTNHNHNNIYSHYNSGTLKSSSSPRDSGFDS 413


>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 87  PPDDEWLPSPMDFSNAKGRA*VAAY 161
           PPD  WLP  + F+NA G   V+ Y
Sbjct: 104 PPDKVWLPDIVLFNNADGNYLVSFY 128


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 308 WSHCGHPQCVSRDLFCH 258
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 87  PPDDEWLPSPMDFSNAKGRA*VAAY 161
           PPD  WLP  + F+NA G   V+ Y
Sbjct: 104 PPDKVWLPDIVLFNNADGNYLVSFY 128


>AF039051-4|AAB94264.1|  539|Caenorhabditis elegans Hypothetical
           protein C14C6.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 596 STTSNYTNYNFAGFIFITRCYSFTVEVNREHLLSTY-FIRKIGIVWSLWVC 447
           +T + Y N      IFI + Y   V++ RE L + Y    ++G++W    C
Sbjct: 367 NTPATYKNEKQVIAIFIVKIYMKLVQLTREMLFNKYQNTSRLGLLWDQPKC 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,209
Number of Sequences: 27780
Number of extensions: 438957
Number of successful extensions: 1288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)