Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4592
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   2.7  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    29   4.8  
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623...    28   6.3  
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713     28   6.3  
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631     28   8.4  
07_03_1122 - 24141043-24141411                                         28   8.4  

>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 502  DSILQLVCDVSVISWH---PAKWSHWKTILIVVENDLKVLHHW 383
            + ++QL    S+I  H    ++W  W+T  +V  N+++ ++HW
Sbjct: 1726 NKLIQLGNSNSIIQSHLQENSEWVEWQTTALVKRNEVENVYHW 1768


>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +2

Query: 128 GEIRAHDPDEGPNAVVHYSIKGGDDSNSFSLETRQGSDKAELVTMVDLD---YESPRKKY 298
           G IR  + D G  A       GG  S S    +R G    E+++          +PRK+ 
Sbjct: 604 GSIRMMEEDGGAGAPSSEDTVGGSGSGSGRGSSRGGGGAREIMSPSPSPPPVVVAPRKRV 663

Query: 299 ELVIRAASPPLWNDVRVEI 355
             V+ AASP     VR E+
Sbjct: 664 RFVLPAASPRPDAGVREEL 682


>01_06_1330 -
           36361275-36361448,36361778-36361973,36362248-36362325,
           36362685-36362807,36363206-36363463,36363914-36364073,
           36364702-36364812,36365159-36365429,36365514-36365663,
           36366383-36367090
          Length = 742

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 102 RTVPSAPRSERYARTIPTKDPTLLC 176
           R +PS  R ER+ R  P KD  L C
Sbjct: 192 RRLPSTERGERFERHCPAKDKGLSC 216


>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
          Length = 946

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 101 ENSPIGTTIGEIRAHDPDEGPNAVVHYSIKGGDDSNSFSLETRQGSDKAE 250
           E   +   IGE  A + +EG           GDDS+S S  +   SD ++
Sbjct: 348 EVEDVDEEIGEENAEEEEEGEEGADEEENDSGDDSDSSSSSSDNSSDSSD 397


>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
          Length = 417

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 467 DADVTDKLQYRILSGNNANLILLNETTGSMTLSPQLTTKRAETGNDGSIGHR 622
           D+DV   L   I  G +   ILL      M L P + +K  E   D ++GHR
Sbjct: 209 DSDVIAVLWEMIFRGTDVVAILLEWAMARMVLHPDIQSKVQEE-LDRAVGHR 259


>07_03_1122 - 24141043-24141411
          Length = 122

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 581 KRAETGNDGSIGHRWCERDQSDDATFPCD 667
           +R   G++G  G R  + D+ DDAT P +
Sbjct: 86  RRGPQGDEGDGGRRQPQGDEDDDATMPVE 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,215
Number of Sequences: 37544
Number of extensions: 436402
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)