Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4592
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.1  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   6.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.6  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 IRAASPPLWNDVRVEILVTDVNDNAPV 388
           +R     + NDV+ E+   D+N  AP+
Sbjct: 64  VRGKKNSIINDVKNELFPEDINKRAPM 90


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 IRAASPPLWNDVRVEILVTDVNDNAPV 388
           +R     + NDV+ E+   D+N  AP+
Sbjct: 65  VRGKKNSIINDVKNELFPEDINKRAPM 91


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 IRAASPPLWNDVRVEILVTDVNDNAPV 388
           +R     + NDV+ E+   D+N  AP+
Sbjct: 64  VRGKKNSIINDVKNELFPEDINKRAPM 90


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 IRAASPPLWNDVRVEILVTDVNDNAPV 388
           +R     + NDV+ E+   D+N  AP+
Sbjct: 64  VRGKKNSIINDVKNELFPEDINKRAPM 90


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 284 PRKKYELVIRAASPPLWNDVRVE 352
           P KK  + +     P W+D RVE
Sbjct: 160 PYKKLSVEVVRREHPFWDDQRVE 182


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 143 HDPDEGPNAVVHYSIKGGDDSNSFSLETRQGSDKAELVTM 262
           H P+   N  VH++      +    L  R+GS+ ++ V +
Sbjct: 401 HHPNCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVLL 440


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 476 RQRHKLAPCQMVPLENNPY 420
           ++ HK+A   +VP   +PY
Sbjct: 64  KKEHKMASMNIVPYHMSPY 82


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 332 WNDVRVEILVTDVND 376
           +NDV   IL+ +VND
Sbjct: 392 FNDVNFRILIANVND 406


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 299 RTSSWGSRSRDPPLLLVQPCRSLDEFPAKNCSNRH 195
           R S   SRS  P LL  QP +  ++  +KN  N H
Sbjct: 35  RRSPSSSRSPSPSLLTSQPHQDHNKEKSKN--NHH 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,860
Number of Sequences: 438
Number of extensions: 4581
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)