Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4591
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.5  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.1  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 696 LKIKFCKKYHNKKTFFYLLLRWLD 625
           L I + K++ N+KTF   +L WLD
Sbjct: 287 LYIAYKKRHDNEKTFMSNILGWLD 310


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 LDRFIAPEIPCILNFMKIVGAVSEIQIIYRY 256
           +++ I P++ C LN  ++ G V+   +IY Y
Sbjct: 763 IEQSIEPDVACYLNHWEVAGCVAS-TLIYHY 792


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 216 SLEPFPRFRLYIGILINKN 272
           SLE F  FRL+ G+ + KN
Sbjct: 177 SLETFLLFRLFFGVFLRKN 195


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 167 LATIYFQKMLFFSCFQ*STLPDIYWRIIILFFLI 66
           LA   F  M+F+S    ST+P   W ++I  +L+
Sbjct: 412 LAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,907
Number of Sequences: 5004
Number of extensions: 62867
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)