Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4591
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          29   4.9  
SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       28   6.5  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              28   8.6  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 195 QGISGAINRSSYDLFSENVVFFVFSIINSSRHL 97
           QGI+  +N SSYD   EN++F    + +S+ HL
Sbjct: 237 QGIASWLN-SSYDAIMENIIFRPLQLNDSTFHL 268


>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 504 RPSNRNAVLLHDRNRQGGGTYSRGLTRGPT 415
           RP+  ++ L H  + Q G  Y+ G TRGP+
Sbjct: 28  RPTTIHSSLAHPHSAQDGTFYNFGATRGPS 57


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 683 FVKNTITKKLFFIYCLDGWTNS 618
           F+KN I K++ ++ C +G TNS
Sbjct: 263 FLKNEIEKEIIYLTCREGLTNS 284


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 629 WTNSQPTWC*VVTGAHRHLRLRCATHLEI*VVRSQYSYNGCPALQTETQFCFTTEIGRVV 450
           WT+   T   +VT  H+HL +   TH  + + +S ++   C       + C     G V 
Sbjct: 467 WTHKDLT---IVTWTHKHLTIVTWTHKHLTIKQSDFAIKQCNTAIRSLEQCLEILRGEVE 523

Query: 449 V 447
           V
Sbjct: 524 V 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,404,647
Number of Sequences: 59808
Number of extensions: 434705
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)