Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4589
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   4.9  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   4.9  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   6.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.4  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   8.5  

>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 407 ISLANA*TQLFI--NKLKNSRERMELCGT--PAVIRQGRNEF---PQLDSETNSSTRSLE 565
           +S A++  + F+  N L N  +  +   T  P+V+RQG+N F    QL    NSS  S  
Sbjct: 35  VSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNMNSSEISNT 94

Query: 566 G*ARD 580
             ARD
Sbjct: 95  HWARD 99


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 613 RFGFHTWTCQTVSCSSFETSCRAV 542
           R G H W C  ++CS  + S R +
Sbjct: 184 RRGIHAWICDEIACSLDDRSRRMI 207


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 389 PNDIDRSQQTQLDLFTDATAIYYSSSNQPLNAN 291
           P DI ++  T L +  D   +  SS +QPL  N
Sbjct: 16  PKDISKNLDTILSVAPDLADVLLSSVDQPLKVN 48


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 440 INKLKNSRERMELCGTPAVIRQGRNEFPQLDSETN 544
           +N L     R  +  TP ++ + R EFPQL +  N
Sbjct: 1   MNNLTPENIRQTILATPFLLNRIRTEFPQLAAVLN 35


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 580 LSDTSKYENQTVVPNLLNTFVMSKKRQHTEYFAGSSQWVAFPIQ 711
           LS+    ++  V+PN L+  + +   + T++     + VAFP++
Sbjct: 507 LSEIGSNDSWLVLPNSLSANIQNDVLRKTDFMCTDKENVAFPLK 550


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = -3

Query: 626 KFGTTVWFSYLDVSDSLVLILRDFLSS-CSFRY--QVEGIRF----APALLRLEFRKVPS 468
           ++ + V  S +++SD+L   + DFL+    FR    ++ IR     A   +R +FR + +
Sbjct: 208 RYFSAVNHSAIELSDALNSKIDDFLNEEVIFRLWRNIDRIRLHAIRAQLCMRNQFRSMNT 267

Query: 467 SLCYFLVY 444
            LCY + Y
Sbjct: 268 DLCYAIHY 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,017
Number of Sequences: 5004
Number of extensions: 56233
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)