Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4589
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    29   3.9  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    29   3.9  
05_05_0364 - 24431903-24432463                                         28   6.7  
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562...    28   6.7  

>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 733 QYFAKSTTGWETRPTEKIRRNTQCAASSSTSQRCSTNLAQRFGFH 599
           Q   +S  G   R T  + RN    +SSST  RC   +  + G H
Sbjct: 617 QTIEESRAGGAYRETRNMTRNELECSSSSTPCRCMRQVGSQLGMH 661


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 733 QYFAKSTTGWETRPTEKIRRNTQCAASSSTSQRCSTNLAQRFGFH 599
           Q   +S  G   R T  + RN    +SSST  RC   +  + G H
Sbjct: 583 QTIEESRVGGAYRETRNMTRNELECSSSSTPCRCMRQVGSQLGMH 627


>05_05_0364 - 24431903-24432463
          Length = 186

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 607 GFHTWTCQTVSCSSFETSCRAVRFAIKLREFVSPLPY-YGWSSA 479
           G     CQ +   S E  C A+R  ++  E   P+P   GWSS+
Sbjct: 73  GLRMQCCQQLQDVSRECRCAAIRRMVRSYEESMPMPLEQGWSSS 116


>01_05_0714 +
           24555494-24555637,24555884-24556071,24556195-24556280,
           24556359-24556461,24556798-24557000,24557077-24557681,
           24557784-24557918,24558040-24558067,24559517-24559596,
           24559873-24559975,24560553-24560635,24560915-24561017,
           24561596-24561720,24562001-24562103,24562647-24562726,
           24563322-24563429,24563521-24563565
          Length = 773

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 541 EQLDKKSRRMSTRLSDTSKYENQTVVPNLLNTFVMSKKRQHTEYFAGSS 687
           E+ DK+ +R+   +     Y N+ + P  L   ++ +K  H+  F+ SS
Sbjct: 139 ERADKEIKRLRGEVPTEGTYNNRGIEPPKLRPGLLRRKSVHSYKFSASS 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,665
Number of Sequences: 37544
Number of extensions: 357455
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)