Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4589
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    30   2.0  
Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z79752-1|CAB02081.1|  323|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.     29   4.5  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    28   7.9  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    28   7.9  

>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 673  NTQCAASSS-TSQRCSTNLAQRFGFHTWTCQTVSCSSFETSCRAVRF 536
            N  C   S+ T   C+TN+ +       +C+TV C   E  CR+  F
Sbjct: 1698 NVVCHCPSNYTQSSCATNVCEGVCGPRGSCKTVPCPKDEPHCRSYSF 1744


>Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical
           protein H15N14.1e protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 735 SSTSQNLPLDGKRDPLRRSGEIL-SVLPL-LRHHKGVQQIWHNGL 607
           S  S +  L G+  P     EI+   +P+ +R H G+  +WH G+
Sbjct: 760 SDESLSYALQGRLGPNENEREIIVESMPVQMRMHMGISHLWHRGV 804


>Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical
           protein H15N14.1d protein.
          Length = 912

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 735 SSTSQNLPLDGKRDPLRRSGEIL-SVLPL-LRHHKGVQQIWHNGL 607
           S  S +  L G+  P     EI+   +P+ +R H G+  +WH G+
Sbjct: 760 SDESLSYALQGRLGPNENEREIIVESMPVQMRMHMGISHLWHRGV 804


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 735 SSTSQNLPLDGKRDPLRRSGEIL-SVLPL-LRHHKGVQQIWHNGL 607
           S  S +  L G+  P     EI+   +P+ +R H G+  +WH G+
Sbjct: 831 SDESLSYALQGRLGPNENEREIIVESMPVQMRMHMGISHLWHRGV 875


>Z79752-1|CAB02081.1|  323|Caenorhabditis elegans Hypothetical
           protein D2005.1 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 735 SSTSQNLPLDGKRDPLRRSGEIL-SVLPL-LRHHKGVQQIWHNGL 607
           S  S +  L G+  P     EI+   +P+ +R H G+  +WH G+
Sbjct: 190 SDESLSYALQGRLGPNENEREIIVESMPVQMRMHMGISHLWHRGV 234


>AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 735 SSTSQNLPLDGKRDPLRRSGEIL-SVLPL-LRHHKGVQQIWHNGL 607
           S  S +  L G+  P     EI+   +P+ +R H G+  +WH G+
Sbjct: 831 SDESLSYALQGRLGPNENEREIIVESMPVQMRMHMGISHLWHRGV 875


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 671 YSVCCLFFDI-TKVFNKFGTTVWFSYL 594
           Y   CLF     + F+ FGT +W SYL
Sbjct: 111 YRYICLFHSAKVRYFDGFGTVLWISYL 137


>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 248 NWPIDINSVKSQPP 207
           NWP+D+ S+ S PP
Sbjct: 479 NWPLDVTSISSAPP 492


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 248 NWPIDINSVKSQPP 207
           NWP+D+ S+ S PP
Sbjct: 514 NWPLDVTSISSAPP 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,466
Number of Sequences: 27780
Number of extensions: 310820
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)