Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4587
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   169   2e-42
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  169 bits (410), Expect = 2e-42
 Identities = 92/202 (45%), Positives = 118/202 (58%)
 Frame = +2

Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIE 646
            L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+E
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVE 182

Query: 647 LVAARGRIKISTLLESRLELIA 712
           L A  G+IK+S+ LESRLELIA
Sbjct: 183 LSARAGKIKVSSTLESRLELIA 204


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical
           protein M03A8.2 protein.
          Length = 2275

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 709 DQLQARLQKCADLDTSPGCNQLDSTTGV 626
           D++  +L  C+D    PGC +  ST+G+
Sbjct: 800 DKINLKLTLCSDAKKLPGCGRKTSTSGI 827


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,391
Number of Sequences: 27780
Number of extensions: 312932
Number of successful extensions: 954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)