Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4584
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     31   0.19 
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.99 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   7.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   7.0  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.0  

>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -2

Query: 742 IPKVQ---NFYLSIEALRSLPGQL-VEIKNIN*KHLSSKTKITQILRSSIIEQKRGRHTR 575
           +PK Q   +F LS E   S P  + +  K +  KH  +   I QI     ++QK+ +   
Sbjct: 276 VPKNQFATDFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAW 335

Query: 574 STVDESEPTRDRHATQRG*WA 512
            T+ E E   + HA + G WA
Sbjct: 336 RTIAEREKL-NAHALEVGTWA 355


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 519 DG-HRKIDVLFSEENHRDEINKQTFRRNICLYIITMNCNLIYKNESVQCMYMYNSRTP 349
           DG + K++ L    N R  +N +TF     L+++ +    ++   S  CM + NS  P
Sbjct: 215 DGPYHKVEKLLKSANIRSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCM-LANSMLP 271


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 712 IEALRSLPGQLVEIKNIN*KHLSSKTKITQILRSSIIEQ---KRGRHTRSTVDESE 554
           +E ++     L  +  ++ K L+ + KI +  ++ ++ Q   K+G+H +ST++  E
Sbjct: 88  VEEIKQKIKNLQGLLGVSIKKLAVEAKIREAAKNLMVAQAKEKKGKHKQSTIEHYE 143


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 655 KHLSSKTKITQILRSSIIEQKRGRHT 578
           +HL S+T+I ++L   +  +K G HT
Sbjct: 648 EHLISRTQIQELLYHQVPSEKAGYHT 673


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 501 DVLFSEENHRDEINKQTF--RRNICLYIITMNCNLIYKNESVQCMY 370
           D+L+ E+    E N + F  R  +  +     CNL+Y+N  ++ +Y
Sbjct: 462 DLLYDEDALTLERNSRDFAERSQVINHNAETICNLLYQNPKIKTLY 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,728
Number of Sequences: 5004
Number of extensions: 63335
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)