Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4584
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0341 - 4442727-4445597                                           30   1.8  
03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370...    28   7.2  

>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -3

Query: 486 EENHRDEINKQTFRRNICLYIITMNCNLIYKNESVQCMYMYNSRTPATDWIILFCCIFLW 307
           EE+ R EI     RR I    + + C LI  N S   + + +   P  DW  L     LW
Sbjct: 44  EESSRAEI--ADIRREIYRTFMDLTCLLILNNGSDHTLDIASFGFPLNDWYNLRDNRLLW 101

Query: 306 SGEGS*ERKLRTKFENLRINNHHIKFSND 220
           +  G    +L  K  +  +++ H+   ND
Sbjct: 102 TFRG--RLRLNPKIAD-NVDSSHLNIFND 127


>03_01_0486 -
           3699290-3699296,3699485-3699745,3699889-3700046,
           3700265-3700469,3701285-3701574,3701648-3701810,
           3701897-3701985,3702086-3702153,3702560-3702722
          Length = 467

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 553 APTRPQLNVCASLSFVL*WSFAGFV*SLFSNLNVFNLYF*SLLADPADFLVPQSINKSSA 732
           A +RP++ + A  S VL W+F G + ++   L +F L   +  + P   L P+ + KS+ 
Sbjct: 2   ARSRPRVWLLAGCSAVLLWAFVGQLVAVGRLLALFGLAGDAEPSPPPTALPPRRVYKSNG 61

Query: 733 LL 738
            L
Sbjct: 62  YL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,437
Number of Sequences: 37544
Number of extensions: 355144
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)